Bradyrhizobium symbiodeficiens: CIT39_05105
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Entry
CIT39_05105 CDS
T06284
Name
(GenBank) heparin lyase I family protein
KO
K20276
large repetitive protein
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CIT39_05105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
W_rich_C
Polysacc_lyase
Big_13
Big_3_5
Big_6
Motif
Other DBs
NCBI-ProteinID:
AWM05889
LinkDB
All DBs
Position
1753059..1760216
Genome browser
AA seq
2385 aa
AA seq
DB search
MAVQTDPPVILAASPDNVVFDKDPGASYSDELLVVGTAIPNSTITVYDGSTLLGTATANS
AGVWTYQTSSLTDGAHSFTATATVSGVTSAASSAFTQTITAGISNFSPLTDQWSAPILVG
GQQYYVENANVNGNAPWAIKQLDSHTLRFELRPNDIWLDNDSHRSEISGGTVYSATSTID
LSYQFTVQPGFNDTSDSLAWQILGQFHADDNDATYQSIEGGSPPLAVHLTGANGYGEGDY
LAIEAFYALPGQKEWTAATLPGDPLNSYLWVSSAPIVRGQPIDVHMEVNFQNNANGFLEV
WINGQQVVDYHGPIGYGGGVYWKEGVYEGWSSNQTITVDYSNTVITAKPGAPLILTDVVN
GNQVMLGGTSQANSVVSIYDGSTKLGTATASSNGSWFYQTSALSIGSHNLTATATDSAGN
VGQASAIASATIAALTAPIITKVATSAPSGATVTGTKITFTLTMNSVVSVTGTPTLLLND
GGTAVYSAGSGSNTLTFTYTVGANDSSVKGLAIVGADLPNGATIKDGNGIAALLTGASVQ
FPGVTIDAQPVKTPVFGDPVDNGNGTFTFTGTAGANTTVYFSTPYGVALGSAAVDSTGHW
TFTSPTFAGNTWNSIQAYNVNSLGNVSAIGVENGAGFGSSSNLPPSPIITGNALVGSTVT
LYGMVTPGYSITKVTIFDGTTQIGTATINSDNSWSFSTSTLANGVHNFTAKVTNASGTSA
GSIPDLITVGTLTTGTDTTAPTVASLVAAGNGVTAGTGTIGVGSVVTLTMNLSEAVTVAG
GTPTLTLNNGGTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKDSAGNAAS
LAGAVTNPSGTLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGT
PTLTLNNGGTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKDSAGNAASLA
GAVTNPSGTLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPT
LTLNNGGTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKGSAGNAASLAGA
VTNPSGTLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPTLT
LNNGGTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKDSAGNAASLAGAVT
NPSGTLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPTLTLN
NGGTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKGSAGNAASLAGAVTNP
SGTLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPTLTLNNG
GTATYAGGSGSNALTFSYTVAAGQNTSDLAVTAFNLNAATVKDSAGNAASLAGAVTNPSG
TLQIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPTLTLNNGGT
ATYAGGSGSNALTFSYTVAAGQSTSDLAVTAFNLNAATVKDSAGNAASLAGAVTNPSGTL
QIDTTAPTVSSVAASGTGITSGSGTLGSGKVVTLTVNLSEAVTVAGGTPTLTLNNGGTAT
YAGGSGSNALTFSYTVAAADLQVSALAITRVVSNGATVLDVAGNAANLLGALATLPNLSV
DPSITIEALGSTRVVLLGGNYHLDSIATSTGPILKYAGSAVIAANWGSWSVIGAEQVTGG
GYDVVWKDSSSGHYSVWSTDSSGNFVATLGSAPEMLRSDAALKALESTLQQDLNGDGTIT
APVVVGGGNGTTIEALGSTSVVLNGGNYHLNSVGTSTGPILKYAGSKVIAANWGSWSVIG
AEQVTGGGYDVVWKDSSSGHYSVWSTDSSGNFVATLGSAPEMLRSDAALKALESTLQQDL
NGDGTITAPVVVGGGNGTTIEALGSTSVVLNGGNYHLNSVGTSTGPILKYAGSAVIAANW
GSWSVIGAEQVTGGGYDVVWKDSSSGHYSVWSTDSSGNFVATLGSAPEMLRSDAALKALE
STLQQDLNGDGTITAPVVVGGGNGTTIEALGSTSVVLNGGNYHLNSVGTSTGPILKYAGS
AVIAANWGSWSVIGAEQVTGGGYDVVWKDSSSGYYSVWSTDSSGNFVATLGSAPEMLGGD
ASLKALESTLHQDLNGDGVIVLSGSGTIIEANSLIIGSGASVELVGSYSGAISFAGATGT
LVLDQSTEFSGTLNGQLTTTNFIDLRDITAGANASVSYTGNNSPGTLTVSDGTNSANFTL
SGNYSLGNFIVSSDGNGGTTLVDPPLSTDQGSAALARSADAASDWLDSIDSKIALWLQHC
SSAFPSSPFNTSTSGNIGISDVGANPALQLATSAMVQQHQQNSFS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcagacagatccgccagtcattttggcggcctcgcccgataatgtcgtcttc
gacaaagaccccggagcgagttattccgacgaactgttggttgtcggtactgctattcct
aatagcacgatcaccgtctacgatggcagcacgcttcttggtacagcaactgccaacagc
gctggcgtctggacgtaccaaacgtcttcactaacggacggagcgcatagttttacggcc
acagcaacggtcagtggcgttacgagtgctgcgtcgtcggctttcacgcaaactattacg
gcagggatatccaatttctctccgttgaccgaccaatggtcggcaccaatcttggttggc
ggccagcagtactatgtcgagaatgccaatgttaatggcaatgcgccttgggcgatcaaa
cagctcgacagtcatacgctcaggtttgagttgcgccccaacgacatttggctggataat
gacagtcaccgcagtgagattagtggtggcacggtctactcggccacgtcgacgatagac
ctctcataccagtttacggttcaaccgggatttaacgacacgagcgacagtctcgcgtgg
caaattctcggacaattccacgcggacgataatgacgcgacttaccagtcgatcgagggc
ggcagccccccgctggcggtccatctcaccggcgcaaatggttacggtgagggcgactat
ctcgcaatcgaggcgttctatgcgctcccggggcaaaaggaatggaccgcggctactttg
cccggcgatccgctgaatagctatctttgggtatcttcggcgccgatcgtgcgggggcag
ccgattgacgtccacatggaagtgaatttccagaacaacgcaaacggcttcctggaggtt
tggatcaacggtcagcaggtcgtcgactatcacggcccgatcggatacggcggtggcgtc
tactggaaagagggagtttacgaaggttggtccagcaatcagacgatcacggtagactat
tctaacacggtcatcacggccaagcctggcgcgccgctcatcttgaccgatgtggtgaat
ggcaaccaggtcatgttgggtggtacatcccaagccaatagcgtcgtttcaatctatgat
ggatctaccaagcttggaacggcgacggcgtcgtccaatggttcttggttttaccagacc
agcgcgctgtcgattggaagccataacctcaccgcgacagcaaccgatagtgcgggaaat
gtcggacaggcatctgcgattgcgagtgcaacaatagcagcgctcactgctccgattatc
acgaaggtcgccacgtctgccccaagcggcgcgacggttaccggaaccaagatcactttc
acgctgacgatgaattcggtcgtgtcggtgacgggaactccgacgctgctgctgaacgac
ggcggcaccgccgtttacagcgcaggatctggctccaacactctgacattcacttacact
gtcggagcaaacgacagcagcgttaagggtcttgcgatcgtcggcgctgacctgccgaat
ggggcgaccatcaaggacggcaacggaatcgcggctctcctcaccggtgcctccgtccaa
tttcccggagttactatcgacgcgcaaccggtcaagacgccggttttcggcgatcctgtg
gacaatggcaatggtacatttacgtttaccggaaccgcaggggccaatacgaccgtctat
ttctcgacgccatatggcgtcgcgctcggaagcgctgccgttgacagtacaggtcactgg
acctttacgagtcctactttcgccggcaacacgtggaatagcatccaggcatacaacgtt
aattcgcttggaaatgtgagtgcgattggtgtcgagaatggagcggggttcggcagcagt
tcgaacttgcctccttctccgatcatcaccggcaatgcgttggttgggagtactgttact
ctctacggcatggtgacgcccggctactcgatcaccaaggttaccatttttgacggcacc
acgcagatcggcaccgctacgataaatagcgacaacagttggtcgttctcgacgagcacc
ttggcgaacggcgttcacaattttactgccaaagtgacgaatgcgtcaggtaccagcgcg
ggctcaattccggatttgatcaccgttgggacattgacgactggcactgatacgacggca
ccgacggtcgcctccttggtcgcggccggcaacggggtcacggccggtacaggcaccatc
ggcgttggaagcgtcgtgacgttgaccatgaacctgagcgaggcggtgacggtggcgggc
ggcacgccgacgctgacgctgaacaacggcggcacggcgacatatgccggcggctcgggc
agcaatgcactgaccttcagctacacggtggcggctggccagaacacgtccgacctcgcg
gtgacggccttcaacctgaacgccgcgaccgtcaaggatagcgcaggcaacgctgccagc
ctggccggcgccgtgaccaatccatcgggcacgctgcagatcgacacgaccgcgccgacg
gtgtcctcggtagctgcgtcgggcaccgggatcacctcgggcagcggcaccctcggctcc
ggcaaggtcgtgacgttgaccgtgaacctgagcgaggcggtgacggtggcgggcggcacg
ccgacgctgacgctgaacaacggcggcacggcgacatatgccggcggctcgggcagcaat
gcactgaccttcagctacacggtggcggctggccagaacacgtccgacctcgcggtgacg
gccttcaacctgaacgccgcgaccgtcaaggatagcgcaggcaacgctgccagcctggcc
ggcgccgtgaccaatccatcgggcacgctgcagatcgacacgaccgcgccgacggtgtcc
tcggtagctgcgtcgggcaccgggatcacctcgggcagcggcaccctcggctccggcaag
gtcgtgacgttgaccgtgaacctgagcgaggcggtgacggtggcgggcggcacgccgacg
ctgacgctgaacaacggcggcacggcgacatatgccggcggctcgggcagcaatgcactg
accttcagctacacggtggcggctggtcagaacacgtccgacctcgcggtgacggccttc
aacctgaacgccgcgaccgtcaagggtagcgcaggcaacgctgccagcctggccggcgcc
gtgaccaatccatcgggcacgctgcagatcgacacgaccgcgccgacggtgtcctcggta
gctgcgtcgggcaccgggatcacctcgggcagcggcaccctcggctccggcaaggtcgtg
acgttgaccgtgaacctgagcgaggcggtgacggtggcgggcggcacgccgacgctgacg
ctgaacaacggcggcacggcgacatatgccggcggctcgggcagcaatgcactgaccttc
agctacacggtggcggctggccagaacacgtccgacctcgcggtgacggccttcaacctg
aacgccgcgaccgtcaaggatagcgcaggcaacgctgccagcctggccggcgccgtgacc
aatccatcgggcacgctgcagatcgacacgaccgcgccgacggtgtcctcggtagctgcg
tcgggcaccgggatcacctcgggcagcggcaccctcggctccggcaaggtcgtgacgttg
accgtgaacctgagcgaggcggtgacggtggcgggcggcacgccgacgctgacgctgaac
aacggcggcacggcgacatatgccggcggctcgggcagcaatgcactgaccttcagctac
acggtggcggccggccagaacacgtccgacctcgcggtgacggccttcaacctgaacgcc
gcgaccgtcaagggtagcgcaggcaacgctgccagcctggccggcgccgtgaccaatcca
tcgggcacgctgcagatcgacacgaccgcgccgacggtgtcctcggtagctgcgtcgggc
accgggatcacctcgggcagcggcaccctcggctccggcaaggtcgtgacgttgaccgta
aacctgagcgaggcggtgacggtggcgggcggcacgccgacgctgacgctgaacaacggc
ggcacggcgacatatgccggcggctcgggcagcaatgcactgaccttcagctacacggtg
gcggctggccagaacacgtccgacctcgcggtgacggccttcaacctgaacgccgcgacc
gtcaaggatagcgcaggcaacgctgccagcctggccggcgccgtgaccaatccatcgggc
acgctgcagatcgacacgaccgcgccgacggtgtcctcggtagctgcgtcgggcaccggg
atcacctcgggcagcggcaccctcggctccggcaaggtcgtgacgttgaccgtgaacctg
agcgaggcggtgacggtggcgggcggcacgccgacgctgacgctgaacaacggcggcacg
gcgacatatgccggcggctcgggcagcaatgcactgaccttcagctacacggtggcggct
ggccagagcacgtccgacctcgcggtgacggccttcaacctgaacgccgcgaccgtcaag
gatagcgcaggcaacgctgccagcctggccggcgccgtgaccaatccatcgggcacgctg
cagatcgacacgaccgcgccgacggtgtcctcggtagctgcgtcgggcaccgggatcacc
tcgggcagcggcaccctcggctccggcaaggtcgtgacgttgaccgtgaacctgagcgag
gcggtgacggtggcgggcggcacgccgacgctgacgctgaacaacggcggcacggcgaca
tatgccggcggctcgggcagcaatgcactgaccttcagctacacggtggcggcggctgat
cttcaggtttctgcactggctatcacacgggtagtttccaacggcgcaaccgttctggat
gtggccggaaacgcggcgaatctgttaggcgctctagcgactcttcccaatctttcagtt
gatcctagcatcacgatcgaggcgctcggatcgacccgcgtggtgttgttgggcggcaat
tatcatctggacagcatcgcaaccagcacggggccgatcctgaaatatgcgggctctgcg
gtgatcgcagcgaactggggatcgtggtcggttatcggcgccgaacaggtgacgggcggc
ggttacgacgtggtctggaaggattcttcgagcgggcactattcggtctggagcacggac
agctccggcaacttcgtcgcaacgctcggctccgctcccgagatgctgagaagcgacgca
gcgctgaaggcgcttgaatcgacgctgcagcaggatctaaacggtgacggcacgattaca
gcacccgtcgtcgtcggtggcggcaatggtacgacgatcgaagcgctcggatcgaccagt
gtggtgttgaacggcggcaattatcacttgaacagcgtcgggaccagcacaggccctatc
ctgaaatatgcgggctctaaggtgatcgcagcgaactggggatcgtggtcggttatcggc
gccgaacaggtgacgggcggcggttacgacgtggtctggaaggattcttcgagcgggcat
tattcggtctggagcacggacagctccggcaacttcgtcgcaacgctcggctccgctccc
gagatgctgagaagcgacgcagcgctgaaggcgcttgaatcgacgctgcagcaggatcta
aacggtgacggcacgattacagcacccgtcgtcgtcggtggcggcaatggtacgacgatc
gaagcgctcggatcgaccagtgtggtgttgaacggcggcaattatcacttgaacagcgtc
gggaccagcacaggccctatcctgaaatatgcgggttctgcggtgatcgcagcgaactgg
ggatcgtggtcggttatcggcgccgaacaggtgacgggcggcggttacgacgtggtctgg
aaggattcttcgagcgggcactattcggtctggagcacggacagctccggcaacttcgtc
gcaacgctcggctccgctcccgagatgctgagaagcgacgcagcgctgaaggcgcttgaa
tcgacgctgcagcaggatctaaacggtgacggcacgattacagcacccgtcgtcgtcggt
ggcggcaatggtacgacgatcgaagcgctcggatcgaccagtgtggtgttgaacggcggc
aattatcacttgaacagcgtcgggaccagcacaggccctatcctgaaatatgcgggctct
gcggtgatcgcagcgaactggggatcgtggtcggttatcggcgccgaacaggtgacgggc
ggcggttacgacgtggtctggaaggattcttcgagcgggtattattcggtctggagcacg
gacagctccggcaacttcgtcgcaacgctcggctccgctcccgagatgctggggggcgac
gcatcgttgaaggcgctggagtcgacgcttcatcaagacctcaacggtgacggagtgatt
gtcctatctggcagcgggacaatcatcgaagcgaattcgttgattatcggcagtggggca
agcgtggagcttgttgggtcctattcgggcgccatcagcttcgcgggagcgaccggtaca
cttgtactcgaccaatcgacagaatttagcggcactttgaatggtcagcttactacgacc
aatttcatcgatctgcgcgacatcactgccggtgctaacgcgagcgtcagctacacaggg
aataattcacctgggacgcttaccgttagcgatggaaccaacagtgcaaacttcactctt
agcggtaactattcgctggggaatttcatcgtatcaagcgatggaaatggcggcacaacg
cttgtagacccaccgctttctacggatcagggcagcgcagccttggcgcggagcgcggat
gccgcttcggattggctcgattcgatcgattccaagatcgctttgtggttgcaacactgc
tcatctgcatttccatcctcgccattcaataccagtacgtcgggtaacatcggtatttct
gatgtcggtgccaatccggctctccagttggcaacgtctgcaatggtccagcagcaccaa
cagaactctttttcttga
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