Bradyrhizobium symbiodeficiens: CIT39_16055
Help
Entry
CIT39_16055 CDS
T06284
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03030
DNA replication
bsym03430
Mismatch repair
bsym03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIT39_16055 (dnaE)
03430 Mismatch repair
CIT39_16055 (dnaE)
03440 Homologous recombination
CIT39_16055 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsym03032
]
CIT39_16055 (dnaE)
03400 DNA repair and recombination proteins [BR:
bsym03400
]
CIT39_16055 (dnaE)
Enzymes [BR:
bsym01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CIT39_16055 (dnaE)
DNA replication proteins [BR:
bsym03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CIT39_16055 (dnaE)
DNA repair and recombination proteins [BR:
bsym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CIT39_16055 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
AWM07813
LinkDB
All DBs
Position
complement(4093371..4096874)
Genome browser
AA seq
1167 aa
AA seq
DB search
MPSAGFVHLHVHSAYSLLKGSIKIAKLAELAKKDHQPALALTDTDNLFGALEFSDKMAGS
GIQPIVGCELAIDFGDQDPNARNAIGPSRVVLLAAQERGYRSLMRLNSRAFLETPDSHAP
FIKFDWFEGETEGLIALTGGPDGPISLALAGGYAELAALRCERLAGLFGDRLYVELQRHN
TEKERRVESGLIDLAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAETEREQLT
PDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAQSSDAGAVE
AAELKRQAEEGLANRLRVHGLSQGMTDEDYSKRLAFELDVILRMKYAGYFLIVSDFIKWA
KGQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDIDFCQDRR
GEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV
TLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPLY
RDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRNIDVDLATLPIDDA
ESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKH
GDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKKIRAEMD
KQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHYPVE
FIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPNINRSGATFEVGDKVIYYALAALKGVG
IQAIEQIIEERAKRGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRARVFAGA
DSILAACQRAHQAETIGQNDMFGMSADAPTIMLPQIEPWLPAEKLRREYDAVGFFLSGHP
LDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDPTG
HFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDDAAAKTQKGLRI
FVRDTKPLDSIAKRLAGPDMAASNGAAPKVGSPGIAPRSNGDGEVSLVMMLDLETEVEMK
LPGRFKVSPQIAGAIKAVAGVVDVQQL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgccggatttgttcaccttcacgttcactcggcctattcgctgctcaagggc
tcgatcaagatcgccaagctcgccgagcttgccaagaaggaccatcagccggcactggcg
ctgaccgacaccgataatctgttcggtgcgctggagttctccgacaagatggcgggctcc
ggcatccagccgatcgtcggctgcgagttggcgatcgatttcggcgaccaggacccgaac
gcgcgcaacgcgatcgggccgtcgcgcgtggtgctgctggccgcgcaggagcgcggctat
cgcagcctgatgcggctgaactcgcgcgcgttcctggagacgcccgacagccatgcgccg
ttcatcaagttcgactggttcgagggtgagaccgagggtctgatcgcgctgacgggcggg
ccggacgggccgatctcgctggcgcttgccggcggttatgccgagctggccgcgctgcgt
tgcgagcgcctggccggcctgttcggcgaccgcctctacgtcgaattgcagcgccacaac
accgagaaggagcggcgcgtcgaaagcggcctgatcgacctcgcctacgccaagggactg
ccgctggtcgcgaccaacgagccgtatttcgccgcgaccgacgattacgaagcgcatgac
gcgctgctgtgcatcgccggcgggcggctgatcgccgagaccgagcgcgagcagctcacc
cccgatcaccgcttcaagacccgcgccgagatggccgtgctgttcgccgacattccggag
gcgctggcctcgacggtggagatcgccgagcgctgctcgttccgcccgatgacgcgcaag
ccgatcctgccgttcttcaccgtcggcgccgcgcagagctcggacgccggcgcagtcgag
gcggcggaactgaagcgccaggcggaggaggggctcgccaatcgcctgcgggtccacggc
ctgtcgcagggcatgacggacgaggattacagcaagcgcctggcgttcgagctcgacgtc
atcctgcggatgaaatacgcgggctacttcctgatcgtgtccgacttcatcaaatgggcc
aagggccagggcattccggtcggaccgggccgcggctccggcgcaggctcgctggtcgcc
tgggcgctgaccatcaccgacctcgacccgatcaagttcggcctgctgttcgagcgcttc
ctcaatcccgaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgc
ggcgaggtgatccagtatgtgcagcagcgctacggccgcgaccaggtcgcgcagatcatc
actttcggaacgctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtgctgcagatg
ccctatggccaggtcgacaagctgacaaagctggtgccgcagaatccggcggcgcccgtg
acgctcgccgccgcgatcgagagcgagccaaaactgcaggcgttccgcgacgaggatccg
gtggtggcgcgcgccttcgacatcgcccagcgcctcgagggtctgacccgccacgcctcg
acgcatgcggccggcatcgtgatcggcgatcggcccctgagcgagctcgtgccgctctac
cgcgatcccaaatccgacatgccggtgacccagttcaacatgaaatgggtcgagcccgcg
ggcctcgtcaagttcgacttcctcggcctgaagacgctgaccgtgctcgacgtcgcctgc
aagctgctcaagccgcgcaacatcgacgtcgatctcgccacgctgccgatcgacgatgcc
gagagctaccagatgctggcgcgcggcgaggtggtcggcgtgttccaggttgaaagccag
ggcatgcggcgcgcgctggtcgacatgcggccggaccgtttcgaggacatcatcgcgctg
gtggcgctgtatcgcccgggtccgatggcgaacatcccgacctattgcgcgcgcaagcac
ggcgacgaggagccggaatatctgcatcccgtgctggagccgatcctcaaggaaaccttc
ggcgtcatcatctaccaggaacaggtgatgcagatcgcccaggtgatgtcgggctattcg
ctcggcgatgccgacctgctgcgccgcgccatgggcaagaagatccgcgccgagatggac
aagcagcgcgacatcttcgtcgcaggcgcggtgaagaacggcgtgccgaaggggcaagcc
gagaccatcttcgaattgctggccaagttcgccgactacggcttcaacaagagccacgcg
gcggcctatgcgctggtgtcctatcacaccgcctacatgaaggcgcattatccggtggag
ttcatcgcggcgtcgatgacgctcgacctgaacaacaccgacaagctctccgaattccgc
gccgaggcgcagcgcctcggcatcaaggtcgagccgccgaacatcaaccgttccggcgcg
accttcgaggtcggcgacaaggtcatctactacgcgctcgcggcgctcaagggcgtcggc
atccaggcgatcgagcagatcatcgaggagcgcgccaagcggggattgttcacctcgctc
gccgacttcgcggcacgggtcaatccgcgcgcgatcaacaagcgtatcatcgagagtctc
gccgccgccggcgccttcgacacgctggagccgaaccgggcgcgggtattcgcgggggcg
gattcgatcctggccgcctgccagcgcgcgcaccaggccgagaccatcggccagaacgac
atgttcggcatgtcggcggatgcgccgaccatcatgctgccgcagatcgagccgtggctg
ccggccgaaaagctccgccgtgaatacgacgccgtcggcttcttcctgtcgggccatccg
ctcgacgattacgccaccgtgctgaagcggctgcgggtgcagtcatgggccgagttctcg
cgcgcggtgaagaccggtgccaccgccggcaaggtcgcggccaccgtggtctcgcgcatg
gagcggcgcaccaagaccggcaacaagatgggcatcatggggctctcggatcccaccggt
catttcgaggcggtgttgttctccgaaggcctcgcgcaatatcgcgacgtgctggagccg
ggcgctgccgtgctgctgcagctcggtgccgaactgcagggcgaggacgtccgcgcccgc
gtgctgcatgccgagccgctggatgatgccgctgccaagacgcagaaaggcctgcgcatc
ttcgtgcgcgacaccaagccgctggactcgatcgccaagcgtctggccggccccgacatg
gccgcctcgaacggcgccgcgccaaaagtcggcagtcccggcatcgcgccgcgctccaat
ggcgacggcgaggtctcgctggtgatgatgctcgacctcgagaccgaggtcgagatgaag
ctgcccggccgcttcaaggtctcgccgcagatcgccggcgcgatcaaggcggtcgcgggc
gtggtcgacgtgcagcagctctga
DBGET
integrated database retrieval system
