Bradyrhizobium symbiodeficiens: CIT39_17150
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Entry
CIT39_17150 CDS
T06284
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT39_17150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsym03019
]
CIT39_17150 (rnr)
03016 Transfer RNA biogenesis [BR:
bsym03016
]
CIT39_17150 (rnr)
Enzymes [BR:
bsym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CIT39_17150 (rnr)
Messenger RNA biogenesis [BR:
bsym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CIT39_17150 (rnr)
Transfer RNA biogenesis [BR:
bsym03016
]
Prokaryotic type
tRNA degradation factors
CIT39_17150 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AWM08008
LinkDB
All DBs
Position
4320370..4322709
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AA seq
779 aa
AA seq
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MKRKNDHGFPERQAIVAFIKANPGKVGTREIAREFGLKNADRVELKRILRELADDGTVKK
KRHKVSEPDALPPTLVADITGRDADGELIASPTEWDEVESGEPPKIRIQMPRRPKPGTVA
GVRDRVLLRVEPISETEGPAWLGHIIKVFDKAKSRILGVFRALPEGGGRLVPVDKKSADR
ELNIASADTNGAQDGDLVSVDIVRTRSFGLASGRVKDKLGSVKSEKAISLIAIYAHDIPL
QFSPAAMRDAEAAEPANLKGREDWRDVPLLTIDPPDAKDHDDAVHAQPDDDPNNKGGFIV
NVAIADVSFYVRPGSALDRDALDRGNSVYFPDRVVPMLPERISNDLCSLVPGEPRGALAV
RMVLGPDGRKRSHSFHRILMRSAAKLSYAQAQAAIDGRPDGTTGPLLDPILKPLYAAYAC
AKRARDERDPLNLDLPERKILLKSDGTVDRVVVPERLDAHKLIEEFMILANVAAAEMLEK
KSLPLIYRVHDEPTLEKVHALAEFLETLDVPFAKSGALRPTTFNRVLAQLEGHDYYPLVS
EVVLRAQAQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHRALVRALGLGEGALPDS
ETPETLSEVAAHISVTERRAMKAERETVDRLIAHHLADRIGASFQGRVSGVTRAGLFVKL
AETGADGLIPIRSLGTEYFNYDESRHALVGTRSRTMYQLGDVVDVRLIEAAPIAGALRFE
LLSSSSEAAPRERRTSGPQRRPSLKAHPGRSPDRKRKPPKPKPGKKGKGKSKGKKGKAW
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaagaatgaccatggctttcccgagcggcaagccatcgtcgccttcatcaag
gcaaatcccggaaaggtcgggacccgcgaaattgcgcgcgagttcggcctgaagaacgcc
gatcgcgtcgagctcaagcgcatattgcgcgaactcgccgacgacggaaccgttaagaag
aagcgccacaaggtgtccgaaccggacgcactgccgccgaccctggtcgccgacatcacc
ggccgcgacgctgacggcgagttgatcgcctcccccaccgaatgggacgaggtcgaaagc
ggcgagccccccaaaatccgcatccagatgccgcgccggccgaagccgggcaccgtcgcc
ggcgtccgcgaccgcgtgctgctgcgcgtcgagccgatctccgagaccgaaggcccggcc
tggctcggccacatcatcaaggtcttcgacaaggccaagagccgcatcctcggcgtgttc
cgcgcacttcccgaaggtggcggacggcttgtccccgtcgacaagaagtccgccgaccgc
gagctgaacatcgcctcggccgacacgaacggcgcgcaggacggcgatctcgtcagcgtc
gacatcgtccgcacccgcagctttggcctcgcctccggccgcgtgaaggataagctcggc
tccgtcaagtcggagaaggcgatcagcctgatcgcgatctatgcccacgacatcccgctg
caattctcgcccgccgcgatgcgcgatgcggaagcggccgagccggccaatttgaagggc
cgcgaggattggcgcgacgtgccgcttctcaccatcgatccgccggatgccaaggatcat
gacgacgcggtgcatgcgcagccggatgacgatcccaacaacaagggcggcttcatcgtc
aacgtcgccattgccgatgtgagcttctacgtccggccgggcagcgcgctcgatcgcgac
gcgctcgatcgcggcaactcggtctatttccccgaccgcgtcgtgccgatgctgcccgag
cggatctcgaacgatctctgctcgctggtgccgggcgagccgcgcggcgcgctcgcggtg
cgcatggtgctcgggcccgacggccgcaagcgctcgcacagttttcaccgcatcctgatg
cggtcggcggcaaagctcagctacgcgcaggcgcaggccgcgatcgacggccggcccgac
ggcaccaccggtcccctgctcgatccaatcttgaaaccgctctatgcagcctatgcctgc
gccaagcgcgcgcgcgacgagcgcgatccgctcaatctcgatctgcccgaacgcaagatc
ctcctgaagagcgacggcacggtcgaccgcgtcgtggtgcccgaacgtctcgatgcgcac
aagctgatcgaggagttcatgatcctcgccaacgtcgcagccgccgagatgctggagaag
aaatcgcttccgctgatctaccgcgtgcacgacgagccgaccttggagaaggtccacgcg
ctcgcggaatttctggagacgctcgacgttcccttcgccaaatcaggtgcgctgcgtccc
accacgttcaaccgcgtgctggcccagctcgaaggccatgattactatccgctggtcagc
gaagtcgtgctgcgcgcccaggcgcaggccgaatactcctccgagaactacgggcacttc
ggcctgaatttgcgccgctacgcgcatttcacctcgccgatccgccgttatgccgatctc
gtcgtgcatcgcgcgctggtccgcgcactcggcctcggcgaaggcgccctgcccgacagc
gagacaccggaaaccttgagcgaagtcgccgcccacatctcggtgaccgaacggcgtgcg
atgaaggcggagcgggagaccgtcgaccggctgatcgcgcatcacctggccgaccgcatc
ggcgcgagcttccagggccgcgtctccggcgtcacccgcgcggggctcttcgtcaagctg
gctgaaacaggtgccgacggcctgatcccgatccgatccctcggcacggaatatttcaac
tatgacgagagccgacacgccctggtcggcacgcgcagccgcaccatgtatcagctggga
gacgtggtcgatgtccgcctgatcgaagcagccccgatcgcaggcgcgctgcgcttcgag
ctgctgtcgtcctccagtgaggccgcgccgcgcgaacgcaggacatccggtccgcaacgc
cgcccctcgctcaaggcgcatcccggccgcagcccagacagaaaacgcaagccgccgaag
ccaaagcccggcaagaagggcaaaggcaagagtaagggcaagaagggcaaggcatggtga
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