| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
bsym Bradyrhizobium symbiodeficiens
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bsym00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIT39_18390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:bsym03021]
CIT39_18390 (rpoC)
03400 DNA repair and recombination proteins [BR:bsym03400]
CIT39_18390 (rpoC)
Enzymes [BR:bsym01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIT39_18390 (rpoC)
Transcription machinery [BR:bsym03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIT39_18390 (rpoC)
DNA repair and recombination proteins [BR:bsym03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIT39_18390 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(4541458..4545654)
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| AA seq |
1398 aa
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLEATLRLEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
AKVIHLHTKIKYRWQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDIRDSSGKVIIKRGTLMEESHLDAIQQGGVQEVKIRSALTCELVNGICGMCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIA
RNSEGHLVAMVRNMVIAIVDADGTERATHRIQYGARLHVDEGDMVKRGQRIVEWDPYTRP
LLTEVEGIIGFEDLVEGQSITETLDEATGIAKRVVIDWRSTRGGADLRPAIVVKGKDGKV
LKLARGGDARYMLSVDGILSVDVGAKVNPGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTEEAREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQVDKIEFDALNEKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQA
AVVSPAPEAELPALPPAE |
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| NT seq |
4197 nt +upstreamnt +downstreamnt
atgaaccaagaaattatgaatctcttcaacccgacgactccggctcaggtcttcgaccag
atccggatctcgatcgcgtctccagagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcagcccccgtagcgcacatctggttcctgaagtcg
ctgccctcgcgcatcggccttctgctggacatgacgctgaaggatctcgagcggatcctc
tacttcgaatattacgtcgtgctcgagccgggtctcaccgcgctcaaggaccgtcagctg
ctgtcggaagacgagtacctgaaggcgcaggacgagtacggccaggacagcttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctcaagggcatggacctcgagaagctcgaa
gccaccttgcgcctcgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggttccggtgatcccgccggacctgcgtccgctggtgccgctggacggcggt
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcgactgatggagctgcgtgcgcccgacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggtcgccgcggtcgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctattcgcggctcgacgccaagggcctgtccaccacggtgaagcaggccaag
aagctggtcgagaaggagcggccggaggtctgggacatcctggatgaggtcatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgtctcggcatccaggcgttcgag
cccgtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtaccggtggcaggggatggatgagacc
ggcaaggtctcgacgcgctggatcgagaccaccgccggccgcgtcatgctcggcaatctc
ctgccgaagaacccgcggatttcgtacgagatcatcaacaagctgatgaccaagcgcgaa
atctcgggcgtgatcgaccaagtctaccgccactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtaccgcactccaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccatggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctccaccaagaagacggcaagtggagccgatgccgacatcaactcgatctacatg
atggcacactccggcgcccgcggttcgccggcccagatgcgccagctcgcaggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgtaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgtcgtctggtcgacgtggcg
caggactgcatcatcacgcagagcgactgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggttgcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaagacatccgcgacagctccggcaaggtgatcatcaagcgcggcacgctgatggaa
gagagccatctggacgccatccagcagggtggcgtgcaggaggtgaagatccgttcggca
ctgacctgcgaactcgtcaacggcatctgcggcatgtgctatggccgcgacctcgcccgc
ggcacgccggtcaaccacggtgaagccgtcggcgtcatcgcggcgcagtcgatcggcgag
cccggcacccagctgaccatgcgcaccttccacatcggtggtgcggcgcagctcaacgag
cagtcgttcgtcgaatccaacttcgacggcaagatcgtgatccggaacaaggccatcgcc
cgcaacagcgaaggtcacctggtcgcgatggtccgcaacatggtgatcgcgatcgtcgat
gccgacgggaccgagcgtgcgacgcaccgtattcagtacggcgcgcgcctgcacgtcgac
gagggcgacatggtcaagcggggccagcgcatcgtcgagtgggatccctacacgcgtccg
cttctcaccgaagtggaaggcatcatcggcttcgaggatctggtcgaagggcagtcgatc
acggaaacgctggacgaggccaccggcatcgccaagcgcgtggtcatcgactggcgctcg
actcgcggcggcgcggatttgcgtccggccatcgtggtcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacggcattttgtcg
gtcgacgtcggagccaaggtcaacccgggcgacatcctcgcccgtgtctcgaccgagagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcacgg
cgtccgaaggatgcggcgatcatcgccgaaatcgcgggcaccatccggttcgggcgcgac
tacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggaggcgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaacccggcgccgcacgacatccttgcggtcaagggtatcgag
gaactagcggcctatctggtcaacgaaatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctcgggcgagcaggtcgacaagatcgagttcgacgcg
ctcaacgagaaggccaaggaagagggcaagaagatcgccacggggacgccggttctgctc
ggtatcaccaaggcgagcctccagacccgctccttcttctcggcggcctcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggtctc
aaggagaacgtcatcgtcggccggctgatcccggcgggcaccggcgcctccatggccaag
atccgcgaagtcgccgtgaagcgcgacaagatgatcctggacgagcgcgagaagcaggcg
gcggtcgtgtcgcccgcgccggaagcggagcttcctgcgctacctcccgcggaatga |
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