Bradyrhizobium symbiodeficiens: CIT39_18790
Help
Entry
CIT39_18790 CDS
T06284
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03420
Nucleotide excision repair
bsym03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIT39_18790
03430 Mismatch repair
CIT39_18790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsym03400
]
CIT39_18790
Enzymes [BR:
bsym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIT39_18790
DNA repair and recombination proteins [BR:
bsym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIT39_18790
MMR (mismatch excision repair)
Other MMR factors
CIT39_18790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HHH
AAA_12
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AWM08285
LinkDB
All DBs
Position
4623589..4625646
Genome browser
AA seq
685 aa
AA seq
DB search
MATYLDTLNAEQRRAVEHGVADGATVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRR
ILLMTFSRRAAAEMAGRVERIARKVLGENNAAIMRDALTWAGTFHGIGARLLREYAERIG
VDPAFTIHDREDSADLMNLVRHERGLSKTESRFPAKGTCLSIYSRCVNAELEIEKVLGLH
YPWCAGWAAELKGLFAAYVEAKQAQHVLDYDDLLLYWSQMMSDALIAEEIGGRFDHVLVD
EYQDTNRLQSSILLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPQSFSPRAEMITL
DRNYRSTQTVLAAANGVIGLARERFTKNLWTDRAASHKPQLVTVHNEADQARYIVEEVLA
NREQGALLKHQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLALLRFAE
NPRDRVAGFRILHLLPGIGPATAQRVLDQMAESTDPLAVLGQLPVPARTGADWTDFVRTV
ENLRYSEWPVDLERVRLWYEPHLDRLHEESETRRADLMQLEQIASGYASREKFLTELTLD
PPDATSDKSGPPLRDEDYLILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGAGTSAELEEE
RRLLYVAMTRAKDDLHLVVPQRFFTHGQAAKGDRHVYASRTRFIPEQLVYLFERTAWPKA
GAGAARTAAQGPKVDIGARMRGMWR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacatatctggacacgctcaatgcggagcagcgccgcgccgtcgagcatggcgtg
gccgatggtgcgaccgtgggcgcccccctgctggtcattgccggcgccggctccggcaag
accaacacgctggcgcatcgcgtcgcgcatctgatcgtcgccggcgccgatccgcgccgc
atcctgctgatgacgttctcacgccgcgccgcggcggagatggccggccgggtcgagcgt
atcgcccgcaaggtgttaggggagaacaacgccgcgatcatgcgcgatgctctcacctgg
gccggcaccttccacggcatcggcgcgcgcctgttgcgcgaatatgccgaacggatcggc
gtcgatcccgccttcaccatccacgaccgcgaggattccgcagacctgatgaacctggtc
cggcacgagcgcggcctgtcgaagaccgaaagtcgtttccccgccaagggcacctgcctg
tcgatctactcgcgctgcgtcaatgccgagttggagatcgagaaggtgctcgggctccac
tatccctggtgtgcgggctgggctgccgagttgaagggactgttcgcggcttacgtcgag
gccaagcaggcccagcacgtgctcgattacgacgatctgttgctctattggtcgcagatg
atgagcgatgcgctgatcgccgaggagatcggcggccgcttcgatcacgtgctggtcgac
gaataccaggacaccaaccgcctgcaatcctcgatcctcctggcgctcaagcccgacggc
cgtgggctcaccgtggtcggcgacgatgcgcagtcgatctattcgttccgcgccgccacg
gtccgcaacatcctggactttccgcagagcttctcgccgcgcgcggagatgatcacgctc
gaccgcaactaccgctcgacgcagaccgtgctggcggcggccaatggcgtcatcgggctc
gcgcgcgaacgcttcaccaagaacctctggaccgaccgagccgcctcgcacaagccgcag
ctcgtcaccgtgcataacgaggccgatcaggcgcgctacatcgtcgaggaggtgctggcg
aaccgcgagcaaggcgcgctgctcaagcaccaggccgtgctgttccggacctcctcgcat
tccggcccgctcgagatcgagctgacccgccgcaacattccgttcgtgaagttcggcggg
ctgaaattcctcgatgccgcgcacgtcaaggacgtgctggcgctgctgcgctttgccgag
aatccgcgcgaccgcgtcgccggtttccgcatcctgcatctgttgccgggcatcgggccc
gcgaccgcgcagcgcgtgctcgaccagatggcggagagcaccgacccgcttgccgtgctc
ggccagcttccggtgccggcacgcaccggcgccgactggaccgacttcgtccgcaccgtc
gagaatctgcgttactcggaatggccggtcgatctcgaacgcgtgcggctgtggtacgag
ccgcatctcgatcgcctccacgaggagtccgagacgcgccgcgccgatctgatgcagctc
gagcagatcgcgagcggctatgccagccgcgaaaagtttttgaccgagctcaccctcgac
ccgccggatgcgaccagcgacaaatccgggccaccgctgcgcgacgaggactatctgatc
ctctccaccatccactccgccaagggccaggagtggaaatcggtgttcgtgctcaacgtc
gtcgacggctgcatgccgtccgatctcggcgccggcacctccgcggagctcgaagaggag
cgccgcctgctctatgtcgcgatgacgcgcgccaaggacgatctgcacctcgtcgtgccc
cagcgcttcttcacccacggccaggccgccaagggcgaccgccacgtctacgcctcgcgc
acgcgcttcatcccggagcagctggtctatttgttcgagcgcaccgcctggccgaaggcc
ggcgctggcgctgcccgcaccgcggcacagggcccgaaggtcgacatcggggcgcggatg
cgcgggatgtggcggtag
DBGET
integrated database retrieval system
