Bradyrhizobium symbiodeficiens: CIT39_19130
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Entry
CIT39_19130 CDS
T06284
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT39_19130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsym03019
]
CIT39_19130
03009 Ribosome biogenesis [BR:
bsym03009
]
CIT39_19130
Enzymes [BR:
bsym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT39_19130
Messenger RNA biogenesis [BR:
bsym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT39_19130
Ribosome biogenesis [BR:
bsym03009
]
Prokaryotic type
rRNA helicases
CIT39_19130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWM08340
LinkDB
All DBs
Position
complement(4685599..4687569)
Genome browser
AA seq
656 aa
AA seq
DB search
MSFPALTPPLARALAERNYDSPTPVQLAVLADEAAGRDLLVSAQTGSGKTLAYGLAMARD
LLGDAERFGRAAAPLALIVAPTRELAMQVQRELSWIYQHAEARVVSCVGGMDPRREQREL
AAGAHIVVGTPGRLCDHLRRNRLDISELKVVVLDEADEMLNLGFREDMEFILKTTPETRR
TLLFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRVAPGDVEHAVVNVLRF
YEAPSALVFCSTRDHVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVAT
DVAARGIDLPSLDLVIHADLPNDAEVMQHRSGRTGRAGRKGTSVLIVVPARRRRAELLLN
LAGVDADWGTAPQADEIRKLDHERMKDVLFTEETTADDLVLAQALLAERSAEDIAAALAR
LYRARLPSPEDILDPGERAGRPRDDRGRDNVRTPRDDGHSSRGDDRPAGPRSKPGKSSAR
HGMGEATVWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEISERVAE
SFAVKIKRPDKEDNIRLEPMAGAPQQQAPAEERSHAPRRESRDSDHRERRDDRPRDKSEF
KPRSKPHSERGPKFDEAPSSFGKKKHKNKPGHAEPSVMPWSAKGASGKKPKKKNRG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttccggccctcaccccgccgctcgcccgcgctttggccgagcggaattacgat
tcaccgacccccgttcagctcgccgtgctcgcggacgaagctgccggccgcgacctcctg
gtttcggcccagactggctccggcaagaccctcgcttatggcctcgccatggccagggac
ctgctcggcgatgccgagcggttcgggcgggcggccgcgccgctcgccctgatcgtggcg
ccgacccgcgagctcgcgatgcaggttcagcgcgagctctcctggatctaccagcatgcg
gaggcgcgggtcgtctcctgcgtcggcggcatggatccgcgacgcgagcagcgcgagctt
gcggctggcgcccacatcgtcgtcggtacgcccggccggttgtgcgatcatctgcggcgt
aaccgcctcgacatctcggaattgaaggtcgtcgtgctcgacgaggccgacgagatgctc
aatctcggttttcgcgaggacatggaattcatcctcaagaccaccccggagacgcgccgc
accctgctgttctcggcgacgttcccgcgcggcatcgttgcgctcgccaagcaatatcag
cagcaggcgttccggatcgaagtcgccggcgacgaaggcggtcatgccgacatcgagtac
cgcgccatccgggtcgcccccggcgatgtcgaacacgccgtcgtcaacgtgctgcgcttc
tacgaggcgccgagcgcgctggtgttttgcagtacgcgcgatcacgtcaggcatttgcag
gcggcgctgctggagcgcggcttctccgtggtcgccctgtcgggggaattgacgcagaac
gagcgcaccatggcgctgcagtcgctgcgcgacggacgcgcccgcgtctgcgtcgcgacc
gacgttgccgcccgcggcatcgacctgccgagcctcgacctcgtcattcacgccgacctg
cccaacgacgccgaggtcatgcagcatcgctcgggccgcaccgggcgcgcgggtcgcaag
gggacaagcgtcctgatcgtcgtgcccgcccgtcgccggcgcgcggagctgctgctcaat
ctcgcaggggtcgacgccgactggggcacggcgccgcaggcggacgaaatccgcaagctc
gaccatgagcgcatgaaggacgtgctgttcaccgaagagaccacggcggacgatctggtg
ctggcccaggcgttgctggccgagcggtcggccgaggacatcgccgccgcgctggcgcgg
ctctatcgcgcgcggctaccatcgcccgaagacatcctcgatcccggcgagcgagctggc
cggccgcgtgacgatcgcggtcgcgacaatgttcgcacgccgcgcgacgatggccacagc
tcacgcggcgacgatcgcccagcggggccgcgatcgaaaccaggcaaatcctcagcccgt
cacggcatgggagaggccaccgtctggttccgcgccaacatcggacgacgcaagaatgcg
gaagcgcgctggctgctgccgatgatttgccgtcgtggcggcatcgacaagggcgatatc
ggcgccatcaagatcatggacaccacgaccgagttcgagatatccgagcgggtcgcggag
tccttcgccgtcaagatcaagcgtccggacaaggaagacaatatccgcctcgagccgatg
gcgggcgcgccgcagcaacaggcgcctgcggaggagcggtcccacgcgccccggcgcgag
agccgcgacagcgatcatcgtgaacgtcgcgacgatcgtccgcgcgacaagagtgagttc
aagccgcgcagcaagcctcacagcgagcgcgggccgaaattcgacgaggctccgtcgtct
ttcggcaagaagaagcacaagaacaagccgggtcacgcggagccgtcggtcatgccgtgg
tccgcgaagggtgcttccggaaagaagccgaagaagaagaatcgcggctga
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