Bradyrhizobium symbiodeficiens: CIT39_25915
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Entry
CIT39_25915 CDS
T06284
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
bsym
Bradyrhizobium symbiodeficiens
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bsym01002
]
CIT39_25915
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bsym01011
]
CIT39_25915
Peptidases and inhibitors [BR:
bsym01002
]
Cysteine peptidases
Family C82
CIT39_25915
Peptidoglycan biosynthesis and degradation proteins [BR:
bsym01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
CIT39_25915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AWM09540
LinkDB
All DBs
Position
6106832..6109006
Genome browser
AA seq
724 aa
AA seq
DB search
MRDCLNHRAGFDRVLMTVAATFLTVSAGSALAQDQARSSAAELAIEAAIPRPEPANVPPP
TASDIKLDTTATVQDAAKEPAKEPVRADVAPAPAPEKVETNPSDVATTPAPAAPNSETAK
SEPAATTPAAPAPATAAAPAAEPVKAASNVPAADQPVADKLKDIIGAKTSRHFDRKNERA
AIEKFYGARDFAPVWTQGGSLTPAAKGVIARLKDAASDGLNPADYAVPDFASAITPDALA
DAELKLTASMFDYARQAQSGRMHWSQVSGDILYPEHPVDPNEVLAKVTTATDASAALDSY
NPPHKLYKELKAKLAELRGQGNGPVIEIADGPALKYTPARGKKQAEIVVDDPRVPQLRAK
LGITENASDTRYDATVAEAVRKFQTSAEIKATGILDDKTVKAINTPKRDKQIDTVLVNME
RWRWLPRDLGVPSLGDAYVILNIPDYTLKVMQRGQQVWTTRVVTGKPGTHATPLLTETMK
YITVNPTWNVPPSIVYNEYLPALQQDPTVLQRMGLKLEQNRDGSVHISQPPGEANALGRI
RFNFPNKFLVYQHDTPDKNLFSRDERAFSHGCMRVQNPDQYASVLLGIALPNEKYTPERI
RSMYGKSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDATMINILKNNRGKDLE
AVVAHSQPSYSRPATTLPSGVAVANNGGGFGSSGPNFFERLFGAPTPPPAPVGRRPQQQR
VFTR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgactgtttgaaccaccgtgcaggcttcgatcgtgtcttgatgacggtcgcggca
accttcctcacggtgtccgccggctcggccctggcccaggatcaggcgcgcagcagcgcc
gccgagctcgcaatcgaagccgcgatcccgcgtcccgagccggccaacgtcccgcccccg
accgcgtcggacatcaagctcgacaccaccgccacggttcaggacgccgccaaggaacca
gcgaaggagcccgtaagggctgacgtcgctccggccccggcccccgagaaggtcgaaacc
aacccgtctgacgtcgccaccacgcctgcgcccgcagcgccgaacagcgaaaccgcgaag
tccgagcctgcagccactaccccggccgcgccggcacccgccaccgctgcggctcctgcc
gctgagcccgtgaaggccgcgagcaacgttcccgccgccgaccagccggtcgccgacaag
ctcaaggacatcatcggcgccaagacctcgcgccatttcgaccgcaagaacgagcgcgcc
gcgatcgaaaagttctatggcgcacgcgacttcgcgccggtctggacccaaggcggcagc
ctgacgcccgcagccaagggcgtcatcgcacggctgaaggacgcggcgtccgacggcctc
aatcccgccgactatgcggtgcccgacttcgccagcgccatcacgcccgatgcgctggcc
gatgcagagctcaagctcaccgccagcatgttcgactatgcgcgccaagcccagagcggc
cgcatgcattggtcgcaggtcagcggcgacatcctctatcccgagcatccggtcgatccg
aacgaggtgctcgccaaggtcacgaccgcgacggatgcctccgctgcgctcgacagctac
aatccgccgcacaagctctacaaggagctgaaggccaagctcgcggagcttcgcggtcag
ggcaacggcccggtgatcgagatcgccgatggtccggcgctgaaatacacgcctgcccgc
ggtaagaagcaggctgaaatcgtcgtcgacgatccgcgcgtgccgcagctgcgcgccaag
ctcggcatcaccgaaaacgcgagcgacacccggtatgacgcgacggtcgccgaagccgtg
cgcaaattccagaccagcgccgagatcaaggcgaccggtatcctcgacgacaagacggtc
aaggcgatcaacaccccgaagcgcgacaagcagatcgacaccgtgctggtgaacatggag
cgctggcgctggctgccgcgcgaccttggcgtgccctcgctgggcgatgcctatgtcatc
ctcaacattccagactacactctgaaggtcatgcagcgcggccagcaggtctggaccaca
cgtgtcgtgaccggcaagccgggaacgcatgcgaccccgctgctcaccgagacgatgaag
tacatcacggtcaacccgacctggaacgtgccgccgtcgatcgtctacaacgaatatttg
ccggcgcttcagcaggacccgaccgtgctccagcgcatgggtctcaagctcgagcagaac
cgcgacggctccgtgcacatttcccagccgcccggcgaagccaacgcactcggccgcatc
cgcttcaacttcccgaacaagttcctggtctatcagcacgacacgccggacaagaacctg
ttctcaagggacgagcgcgccttcagccacggctgcatgcgcgtgcagaacccggatcag
tacgcctccgttctgctcggcatcgcgctgccgaacgagaagtacacaccggagcgtatc
cgcagcatgtacggcaagagcgagatcgacctgaaatttccgaccccgatcccggtcaac
atcacctatcagaccgccttcgtggacgacgccggcaagctgcagttccgcaaggacgtc
tatggccgcgacgcgaccatgatcaacatcctgaagaacaaccgcggcaaggatctcgaa
gccgtcgtcgcgcactcgcagccgagctattcgcgcccggcgacgaccctgccctccggc
gttgcggtggccaataatggcggcggcttcggctcgtccggcccgaacttcttcgagcgg
ctgttcggggcgccgacacccccgccggctccggtcgggcgccggcctcagcagcagcgg
gtgttcacccggtaa
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