Bradyrhizobium symbiodeficiens: CIT39_26840
Help
Entry
CIT39_26840 CDS
T06284
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIT39_26840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsym03019
]
CIT39_26840
Enzymes [BR:
bsym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIT39_26840
Messenger RNA biogenesis [BR:
bsym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIT39_26840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
HEM4
Utp25_C
ERCC3_RAD25_C
DUF8086
Coprogen_oxidas
Motif
Other DBs
NCBI-ProteinID:
AWM09701
UniProt:
A0A2U8QHU5
LinkDB
All DBs
Position
6301692..6303290
Genome browser
AA seq
532 aa
AA seq
DB search
MRRAPAFDMERTPLLTSFQDFGLAEPIARALQEENYVTPTPIQTQTIPTALTGRDVVGIA
QTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQ
VDFSAKPAFLAKLLKQEQVNRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRER
TLAQFRSGDIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAI
SLVAGGEELSYLRDIERLIKVALPREDLRTDAGRRDAGAPAPQQRQGRGGRPGQRPQGAR
HGEARHGDGRRSEERHSDGRHHTAGKQGDGRPGEGRHGGEARHADGRPGNGPNASKGSRR
PRSGGKANSSPNGRPEQRSVHSAGAADGIQGVAFLRRESRPNGQPTRKPHSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgcccgcttttgacatggaaagaacccctcttttgacttcgtttcaggac
ttcggcctcgccgaaccgatcgcgcgcgctcttcaagaagagaactacgtcactcccacc
cccattcagacccagaccattcccacggcgctgaccggccgcgatgtcgtcggcatcgcc
cagaccggcaccggcaagaccgcgtccttcgcgctgccgatcctgcaccgcctgctcgag
caccggatcaagccgcagcccaagaccacccgcgtcctggtgttgtcgccgacccgcgag
ctgtccggccagatcctcgacagcttcaacgcctatggccgccacatccgcctgtcctcg
acgctcgccatcggcggcgttccgatgggccgtcaggttcgctcgctgatgcagggcgtc
gaagtgctggtcgccacccccggccgcctgctcgacctcgtgcagagcaacgggctgaaa
ctgtcgagcgtcgaattcctcgtgctcgacgaggccgaccgcatgctcgacatgggcttc
atcaacgacatccgcaaaatcgtcgccaagctgccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggatatcgccgagctcgccgacgccatgctgcgtgaccccgcc
cgcgtcgcggtgaccccggtctcctcgaccgtggagcgcatccagcagcgcatcatccag
gtcgatttctccgcgaagccggcgttcctcgccaagctgttgaaacaggagcaggtcaac
cgcgctctggttttcacccgcaccaagcacggcgccgacaaggtggtgaaaacccttgag
aaggccggcatcgccgccagcgccatccacggcaacaagtcgcagaaccatcgcgaacgg
acgctggcccagttccgctccggcgacatccgcacactggttgccaccgatatcgccgcc
cgcggcatcgatgtcgacggcatcactcacgtcatcaatttcgacctgcccaacgtgccc
gagacctatgtgcaccgcatcggccgcaccgcgcgtgccggcgccgagggcaccgcgatc
tcgctggtcgcaggtggcgaggaactcagctatctccgtgacatcgaacggctgatcaag
gtggcactgccgcgcgaagatctccgcaccgacgccggccgccgcgatgcgggcgctccc
gcgccgcagcaacggcagggccgcggaggccgcccgggccagcgtccgcaaggcgcaagg
catggcgaggcacgtcacggtgacggacgtcgtagcgaggaacgacattccgacggacgc
caccataccgccggcaagcagggtgatggacgtcccggtgaaggccgacatggcggcgaa
gcgcgacatgctgacgggcggcccggcaacggcccgaacgcctcgaaggggtctcgtcgt
ccgcgctctggggggaaggcgaattcttccccaaacggccgtccggaacagcgttccgtg
catagcgccggggcggctgatgggatacaaggcgtggcctttttgcgccgggagagtcgg
ccgaacggccaaccgacccgcaaaccccattcgcactag
DBGET
integrated database retrieval system
