Bradyrhizobium symbiodeficiens: CIT39_30560
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Entry
CIT39_30560 CDS
T06284
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsym03016
]
CIT39_30560 (truB)
Enzymes [BR:
bsym01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CIT39_30560 (truB)
Transfer RNA biogenesis [BR:
bsym03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CIT39_30560 (truB)
Prokaryotic type
CIT39_30560 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AWM11382
LinkDB
All DBs
Position
54474..55610
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AA seq
378 aa
AA seq
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MTMDPAHDTISGEQADQRDVQKNNLADDNFAGLGGDSQPHQEPRRVNNDPRANTRQKGNQ
VRRDRRDVHGWVVLDKPIGMTSTQAVAVLKRLFNAKRAGHAGTLDPLASGGLPIALGEAT
KTVPFVMDGRKRYQFTVCWGEERDTDDIEGRVTATSDQRPTREAILALLPRFTGVIEQIP
PRYSAIKIQGERAYDLARDGEIVELAARPVEIHHLTLVNQPDNDHAVFEAECGKGTYVRA
LARDMGRILGTYGHICALRRTLVGPFGENDMIPLDQLEALCDRAASGEGSLADALMPVET
ALDDIPALAVTRADAARLHRGQAVLLRGRDAPTSSGTVYVTVAGRLLALAEVGNGEIIPK
RVFNLTGLTASSGRNERN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggacccggctcacgacacgatcagcggcgaacaggccgatcagcgcgacgtg
cagaagaataatctggcggacgataattttgcgggcctgggcggcgattcgcagccgcat
caggagccgcgccgcgtcaacaacgatccgcgcgccaacaccaggcagaagggcaaccag
gtccgccgcgaccggcgcgacgtccatggctgggtcgtgctcgacaagccgatcggcatg
acctcgacgcaggcggttgcggtgctcaagcggctgttcaacgccaagcgcgccggacac
gccggcacgctcgatccgctcgcctcgggagggctgccgatcgcgctcggggaagccacc
aagaccgttcccttcgtcatggacggccgcaagcgctaccagttcacggtgtgctggggc
gaggagcgcgacacagacgacatcgagggccgggtgaccgcgacctccgaccagcgtccg
acccgcgaggccatcctggccctgttgccccgcttcacaggggtgatcgagcagattccg
ccgcgttattccgcgatcaagatccagggcgaacgcgcctatgacctcgcccgcgatggc
gaaatcgtggaattggcggcccgcccggtcgagattcaccatttaacccttgtaaatcaa
ccggataacgaccacgccgtgttcgaggccgaatgcggcaagggcacctatgtccgggca
cttgcccgcgatatgggccggattctcggcacttacggccatatctgcgcgctcaggcgg
accctggtcggcccatttggcgaaaacgacatgattccgctggatcagctggaggctttg
tgcgatagagccgcgtccggcgagggtagcctcgcggacgcgcttatgcccgttgagacc
gcgctggacgacatcccggcactggccgtcactcgggctgatgcggcaaggctccatcgg
ggccaggccgttttgttgcgcggacgggatgcgcccacaagtagcggcacagtctatgtc
acggtggcaggccgtcttctcgcgcttgctgaagtcggcaacggcgaaatcatccccaag
cgtgtgttcaacctgaccggcctgactgccagctccggtcgcaacgagagaaattga
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