KEGG   Bradyrhizobium symbiodeficiens: CIT39_31320
Entry
CIT39_31320       CDS       T06284                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bsym  Bradyrhizobium symbiodeficiens
Pathway
bsym03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsym00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CIT39_31320 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsym03021]
    CIT39_31320 (rho)
   03019 Messenger RNA biogenesis [BR:bsym03019]
    CIT39_31320 (rho)
Transcription machinery [BR:bsym03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CIT39_31320 (rho)
Messenger RNA biogenesis [BR:bsym03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CIT39_31320 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: AWM10492
LinkDB
Position
205739..207004
AA seq 421 aa
MREIKLEDLKSKTPAELVSFAEENGVENASTMRKQELLFAILKQLALAETDIVGQGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKAKHKVNFDNLTPLFPNQRFRMEIDDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITHNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPA
IDISRSGTRKEELITDPQVLKKMYVLRRILNPMGTMDAIDFLLDKLRSTKSNSEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaattaaactcgaagacctcaagtccaaaaccccggccgagctcgtctcgttt
gcggaggagaatggggtcgagaatgccagcacgatgcgcaagcaggaactgctgttcgcc
atcctcaagcagctcgcgctcgccgagaccgacattgtcggccagggtgtcgtcgaggtt
ctctccgacggcttcggctttctccgctcgcccgatgcgaactatctgccgggcccggac
gacatctacgtttcgccgtcgcagatccgccgtttcggcctgcgcaccggcgacaccatc
gaaggccacatccgcagccccaaagagggcgagcgctatttcgcgctgctgaaggtcaac
acactcaatttcgaggacccggaaaaggccaagcacaaggtcaatttcgacaacctcacg
ccgctgtttccgaaccagcgtttccgtatggaaatcgacgatccgacgcgaaaagacctt
tctgcaagggtgatcgacattgtcgcgcccatcggaaagggccagcgcgcgctgatcgtg
gcgccgccgcgcacgggtaaaaccgtgctgatgcagaacatcgcgcactcgattacgcac
aaccaccccgaatgctatctgatcgtgctgctgatcgacgagcgtccggaagaagtcacg
gacatgcagcgctcggtgaagggcgaggtcgtctcctcgaccttcgacgaaccggcggtg
cgtcacgtccaggtcgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacggc
cgcgacgtcgtgatcctgctcgattcgatcacccgcctcggccgcgcctacaacaccgtg
gttccctcatccggcaaggtgctgaccggcggtgtcgacgccaacgcgttgcagcggccg
aagcgcttcttcggtgccgcccgtaacatcgaggagggcggctcgctgaccatcatcgcg
accgcgctggtcgataccggcagccgcatggacgaagtcattttcgaagagttcaagggc
accggtaactcggagctgatcctcgaccgcaaggtctcggacaagcgcaccttcccggcg
atcgacatctcgcgctccggcacgcgcaaggaggagctcatcaccgatccgcaggtgctc
aagaagatgtacgtgctccgccgcatcctcaacccgatgggcacgatggatgcgatcgac
ttcctgctcgacaagctgcgctcgacgaaaagcaattcggagttcttcgactccatgaac
acctga

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