Bradyrhizobium symbiodeficiens: CIT39_32090
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Entry
CIT39_32090 CDS
T06284
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
bsym
Bradyrhizobium symbiodeficiens
Pathway
bsym00300
Lysine biosynthesis
bsym00470
D-Amino acid metabolism
bsym01100
Metabolic pathways
bsym01110
Biosynthesis of secondary metabolites
bsym01120
Microbial metabolism in diverse environments
bsym01230
Biosynthesis of amino acids
Module
bsym_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
bsym00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CIT39_32090 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CIT39_32090 (dapF)
Enzymes [BR:
bsym01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
CIT39_32090 (dapF)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
CntK_N
DUF2924
Response_reg
Motif
Other DBs
NCBI-ProteinID:
AWM10632
UniProt:
A0ABX5WFG6
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All DBs
Position
359713..360588
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AA seq
291 aa
AA seq
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MSALANHAFAKMNGIGNEIVVVDMRDSAGGVTPDDARAVASAHGGVAYDQLMVLSRPRFD
GTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTAATFETAAGLLNAWQGPAPDLYT
VDMGAPKFGWQEIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWVEDVNAY
DLERFGPLLENHPIFPERANITLAHIVDRDHVTIRTWERGAGLTRACGSAACATAVAAAR
LKRTERKVEITLPGGKLGIEWRERDDHVLMTGTATFEYEGRFDPALFAPAA
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgctggccaaccacgcatttgccaagatgaacggcatcggcaacgagatcgtc
gtcgtcgacatgcgcgattccgcaggcggggtgacgccggacgacgcccgcgcggtggcg
tcggcacatggcggcgtggcctacgaccagctcatggtgctctcgaggccgcggttcgac
ggcaccgaggcctttatcagcatctacaataatgacggctcggaggccggcgcctgcggc
aacgggatgcgctgtgtggtgcggcgcatcttcgagaagaccgggcagaccgccgcgacg
ttcgagaccgcggccggcttgctcaatgcctggcagggcccggctccggatctctacacc
gtcgacatgggtgcgccgaagttcggctggcaggagattccgctggccgaggagtttcgc
gacacccgctacatcgaattgcagatcgggccgatcgacaatccgatcctgcattcgccc
tcggtggtgagcatgggcaatccgcatgcgatcttctgggtcgaggacgtcaacgcctat
gatctcgagcgtttcggtcccttgctcgaaaaccacccgatcttcccggagcgcgccaat
atcacgctcgcccacatcgtcgatcgcgaccacgtcacgatccgcacctgggagcgcggc
gccgggctgaccagggcctgcggttcggcggcctgcgcgaccgcggttgccgccgcgcgg
ctgaagcgcaccgaacgcaaagtcgagatcacgctacccggcggcaagctcggcatcgaa
tggcgcgagcgcgacgaccacgtgctgatgacgggcacggcgaccttcgaatatgagggc
cgattcgatccggcgctgttcgcgccggccgcctga
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