Bos taurus (cow): 100139548
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Entry
100139548 CDS
T01008
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bta
Bos taurus (cow)
Pathway
bta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100139548 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
100139548 (SKIC2)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100139548 (SKIC2)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100139548 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
100139548 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
100139548
NCBI-ProteinID:
XP_003587743
Ensembl:
ENSBTAG00000005587
VGNC:
107293
LinkDB
All DBs
Position
23:complement(27399243..27409300)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAER
LFLSSPAWLPLHGVEHSAREWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSSTTSLSLRRPPAPISQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTLPPGFKKGVDFAPKGHSAPAAGLLSLSRLLEPLDLGGGDEDESEAVGQPGGPRQD
TVSASPGSVPLARASSLEDLVLKEAATTVAPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLGALEEPEVTGQLVDLPEYYSWGEELTETRSQIQHRIIESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRVFTALVLCDKPVSEDPRERGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRLNGDKILEDFSKRQQPKFKKDPPSAA
VTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRT
VAKRIGEVQAACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtagagctgggatgcactgggcgctgggagttgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaggaagcagagcgg
ttgtttctgtcatctccagcctggctgcctctgcatggtgtggagcactcagcccgggaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcgtccacaacctccttgtctcttcgccggccaccagcgccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccagtataacagatctgagcactcgtgaggaggctgaggaggagatagactttgag
aaagacctccttactcttccacctggcttcaagaaaggcgtggacttcgcaccaaagggt
cactcagctccagctgccgggttgctcagcctcagccgtctgctggagcccttggatttg
ggtgggggcgatgaggatgagagtgaggcagtgggacagcctggcgggcccagacaggac
actgtttcagcctctcctggcagtgttcctctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcggccacaactgtagcccccccagaacctcccaagcccccacctcag
gagcagtgggccattcctgtggatgttacctcccctgttggtgatttctaccgcctcatt
ccccagccagcctttcagtgggcctttgagccagatgtgtttcagaaacaggccatcctg
cacttggagcggcacgactcagtcttcgtcgcggctcacacatccgcggggaagacggtt
gtggctgaatatgccatcgcgcttgcccagaaacacatgacgcgcaccatctatacttcg
cccatcaaggctctgagcaaccagaagttccgggacttccgaaacacgtttggggacgtg
gggctgctcaccggggatgtgcagctgcacccagaagcctcgtgcctcattatgacaacg
gagatccttcgctccatgctgtacagtggctcggacgtcatccgggacctggagtgggtt
atctttgatgaggttcactatatcaatgatgctgagcgcggggtcgtgtgggaggaggta
ctcatcatgctgcctgaccacgtgtccatcatccttctgagtgctactgtccccaatgcc
cttgagtttgctgactggattggacggctgaagcgtcgccagatctacgtgatcagcact
gtcgctcgcccagtgcccctggagcactatctcttcacggggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgtggcgccttccacacaaaggggtactatgcg
gctgtggaggccaagaaggagcggatgagcaagcatgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcccaggaccgcggtgtgtacctgtccctcctggcctcc
ctccgcacccgtgcacagctgcccgtggtggtgttcaccttctcccggggccgctgtgac
gagcaggcctcgggcctcacctccctcgacctgacaacaagttcagagaagagtgagatt
cacctcttcctacagcgctgccttgcccgtctccgcggctctgaccgccagctgccccag
gttctgcacatgtcggagctcctgcaccgtggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggagattgtggagatgctcttcagccgcggcctggtcaaggtcttgttt
gccacggagaccttcgccatgggtgtaaatatgccggcccggacagtggtatttgactcc
atgcgcaagcacgatggctccaccttccgggacctactccctggggagtatgtgcagatg
gcgggccgggcgggccggaggggcctggaccccacaggcacggtcatcctgctctgcaag
ggccgcgtgcccgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacttgctgcgggtggatgctctc
agggtggaggacatgatgaagaggagcttctcagagtttccatctcgcaaggacagcaag
gcccatgaacaggctctggctgaactgaccaagaagttgggagctttggaagagcccgag
gtgactggccagctcgtcgacttgcctgagtactacagctggggggaggaactgactgag
acccggagccagatccagcaccgcatcatagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtggttgtgaagaatcaggagcatcacaacgcactgggtgtgatcctt
caggtctcttcgaactccaccagcagagtattcacagccctggtcttgtgtgacaagccc
gtgtctgaggacccacgggagagggggccagcctccccagatgtgccctacccagacgac
ctcgtgggattcaagctgttcctgcctgaggggccctgtgaccacactgtggccaagctc
cagccaggagacgtggccgccatcaccaccaaggtgctccggctaaatggggacaagatc
ttggaggacttcagcaagcggcagcaaccaaaattcaagaaggatccgccctctgcggcc
gtgaccactgctgtccaggaactgctacgactggctcaggcgcaccccacaggacccccc
accctcgaccctgtcaatgacctgcaactcaaggatgtgtctgtggtcgagggggggctc
cgggcccggaagctggaggagctgatccggggggctcagtgtgtgcacagtccccgtttc
cctgcccagtacctgaagctgcgggagcggatgcagatccagaaggagatggagcggctg
cgcttcctgctgtcggaccagtcgctgctgctgctcccggagtaccaccagcgagtagag
gtgctgcgaaccctggggtatgtggacgaggcaggcacagtgaagctggccgggcgggtg
gcttgtgccatgagcagccacgagctgctcctcaccgagctcatgttcgacaacgcactg
agcaccctgcggcctgaggagatcgctgccctgctctccggcctggtctgccagagcccc
ggggaccctggtgatcagctccccagcaccctcaaacagggggtggaacgggtccggact
gtggccaagcggattggtgaggtccaggcggcctgtggtttgaaccagactgtggaggaa
tttgttggggagctgaatttcgggctggttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcagggacccctgagggcctggtggtccgctgcatc
caacgcctggccgagatgtgtcgctcgcttcggggggcagcccgcctggtgggcgaacct
gtgctaggtgccaagatggagacggcagccaccctgttacggagggacatcgtctttgct
gccagcctctacacccagtga
DBGET
integrated database retrieval system
