Bos taurus (cow): 100298738
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Entry
100298738 CDS
T01008
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X3
KO
K13191
RNA-binding protein 16
Organism
bta
Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bta03021
]
100298738 (SCAF8)
03041 Spliceosome [BR:
bta03041
]
100298738 (SCAF8)
Transcription machinery [BR:
bta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100298738 (SCAF8)
Spliceosome [BR:
bta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100298738 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100298738
NCBI-ProteinID:
XP_010807010
Ensembl:
ENSBTAG00000031917
VGNC:
52823
UniProt:
A0A3Q1MSD5
LinkDB
All DBs
Position
9:91411939..91633288
Genome browser
AA seq
1264 aa
AA seq
DB search
MDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLY
VIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFK
SEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITN
TDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAA
AAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIFHQIA
EQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDD
SIDIQQQDMDIDEVQDAVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRK
RKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQV
DKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVI
KIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKS
SEPVKETVQTTQSPPPAEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVNLVPPTFPVSMP
VPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSMTP
ETVKDVGFGSLVLPGGSVASSLATATLPAGNVFNPPTKQAEPEEKVPHLIDHQISSAENT
RSVIPNDISSGPAILGQPPNVTSNSGILGVQRPNVSSNNEILGVRPSNVSSSSGIIGPQP
PNILNNSGILGLQPPNVSSSSGLLGVLPPNMPNNSGLIGVQPPGIPSTSGLLGTQPPAGP
QNLPPLNLPNQRMPAMPMLDIRPGLIPQTPGPRFPLIQPGIPPQRGLPPPAVLDSALHPP
PRGPFPPGDIFSPPERPFLVPGRQNVDNVPNPEKRIPLGNDNIQQEGDRDYRFPPIEPRE
AISRPPPVDVRDVVGRPVDPREGPGRPPLDARDHFGRPPVDIRENLVRPGIDHLGRRDHF
GFNPEKPWGPRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVH
RDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWIPPPHARVFEFFEGATSQR
KGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLASSSEVNKKSDTVADVESEPVVESTE
TEGT
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggacacaagaagcatattgtattccctgaatgactacaagccacccatttctaaagcg
aaaatgacccaaattactaaggcagccatcaaagctataaagttctataaacatgtggta
cagagtgttgagaaattcattcagaaatgtaaaccagaatataaggtgcctggactttat
gttattgactctattgtacgacaatctcgacatcaatttggtcaagaaaaggatgtgttt
gcacccagatttagtaataacatcattagcactttccagaatttataccgttgccctgga
gatgacaagagtaaaatagtgagagtattaaacttatggcagaagaataatgtatttaag
agtgagattattcagcctcttctggatatggcagcagggattcctcctccagttgtcaca
cctgttctggccagtactactgctgctatgagcaatactccaggaactcctgtgacacct
gttactccagccaatgtggtccaaggtttacctgatccgtgggtgtctcagataacaaat
acagatacacttgcagcagtagctcagatcttacaaagtcctcaaggccaacagcttcag
cagttaatacagactttacagatacagcagcagaagcctcagccctccatcctgcaagcc
ctggatgctggtcttgtcgtccagctgcaggctcttacagcacagcttacagcagcagct
gcagcagccaacacccttaatcccctagaacagggggtgtcttttaacaagaagttgatg
gataggtttgattttggagaagattctgagcatagtgaagaacccaaaaaggaaattcca
gcttctcaactttctcatgtttcggaatctgtgaacaattccatctttcatcagatagca
gaacaattgcagcagcaaaaccttgaacatctcagacagcaactcctggaacagcagcag
cctcaaaaggcaactcctcaggatagtcaagaaggaacatttgggtcagaacattctgca
tcaccgtcacaagggagcagtcagcagcatttccttgaacctgaagcaaatttggatgat
tctatagatattcagcaacaggatatggatatagatgaagtgcaagatgcagtggaagag
gagatctttgaacaggaagcaaagaaagtggctgttcgttcaagatcaagaacacactcc
cgatctcgttcaagatcaccaagaaaacgaaggtctaggtcacgatctggttctcgaaag
cgtaagcacagaaagcgatcacgctcccgctctagagaaagaaaaaggaaatcatcacgt
tcatactcaagtgaaaggagagctagagaaagggagaaagaacggcagaagaagggatta
cctccaattagatctaaaacattaagtgtatgcagtactactctgtgggtcggtcaggtg
gacaagaaggcaacacagcaggatttaaccaacctgtttgaagagtttggacagattgag
tccattaatatgattcctcccagaggctgtgcgtatgtctgcatggttcatcgacaagat
gcatttcgagctcttcagaaacttagttccggctcgtataaaattggatccaaggtcatt
aagattgcttgggctttaaacaaaggtgtgaaaacagaatacaaacaattctgggatgtg
gatcttggagttacgtatataccatgggagaaagttaaagtggatgacttggaaggtttt
gcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaaacggtgaaaagc
tcagaacctgttaaagagacggtccagacaactcagagcccacctccagctgaaaaggag
acagtggtcacaacccaggcagaggttttccctccacctgttgctatgttacagattccg
gtagctccagcagtgcctgcagttaatttagtaccaccaacatttcctgtgtcaatgcca
gttcctcctcccggcttcagtccaatccctccgcctccttttctccgagcaagtttcaac
ccttcacaaccaccgcctggtttcatgcctcctccagttccaccccctgttgtaccacca
cctactatcccaccagtagtaccaacatctttagtgcagccgccattatctatgactcca
gaaactgtgaaagatgttggatttggtagccttgttttaccaggtggttctgttgccagc
agtcttgctactgccactctgccagctggaaatgtttttaatcctccaacgaaacaagca
gagcctgaagaaaaagtacctcatcttattgatcaccagatttcttctgcagaaaacacc
agatcagtgattccaaatgatatttcaagtggccctgcgattttaggacagccgccaaat
gtgacaagcaattctggaattctgggagtccaaagaccaaacgtatccagtaataatgaa
attcttggagtccggccatctaacgtttccagtagttctgggattattggaccccagcca
ccaaatattctaaataactctggaattttgggattacagccaccaaatgtgtcaagtagt
tctggacttttgggagtgctccccccaaatatgcctaataattccggacttatcggagta
cagccacctggtatcccaagtacttctgggcttttgggaacacaaccaccagctgggcct
caaaacttaccccctttaaatcttcctaatcaaaggatgcctgcaatgccaatgttagac
attcgtccaggactgatcccacagacgcctggaccacgattccctttaatacagcctgga
attccaccccagcggggactccctcccccagcagtacttgattcagctctgcatccacca
ccccgtggtccttttcctccaggagatatttttagtccacctgaaagaccttttctagtt
cctggaagacaaaatgtagacaatgttcctaacccagagaaaaggataccacttgggaat
gataacattcagcaggaaggtgacagagattaccggtttcctcccattgaacccagggaa
gccatcagtagacctcccccggtggatgttagggatgtggttggacgacctgttgatcca
cgagaaggtcctggaaggcctccgttagacgctagagatcattttggaagacctcctgta
gatatcagggagaatctcgtgaggccaggcatagatcatcttggccgaagagaccacttt
ggctttaatccagagaagccctgggggcccagagattttgatgagcgagagcatcgagtt
ctacctgtctatggcggtccgaaaggcttacatgaagaaagaggtagatttcggtctgga
aactaccggtttgatcctcgaagtggtccttggaacagaggattcggacaagaggttcac
agagattttgatgaccgcagaagaccctgggagaggcagagggacagggatgacagagat
tttgatttctgcagagaaatgaatgggaatcgtcttggacgagatagaattcagaacacc
tggatcccgcctcctcatgctcgggtttttgagttttttgaaggggccacttctcaacga
aaaggtgataacgtgcctcaggttaatggtgaaaacactgagagacacgcccagccaccg
cctttgccagcgcagagtgatcctgaactgtatgagaaactggcctcctcaagtgaggta
aacaagaagagtgacacagttgctgatgtagagagtgaaccagtggtagaaagcacagaa
actgaggggacataa
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integrated database retrieval system
