Bos taurus (cow): 407142
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Entry
407142 CDS
T01008
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform 1 preproprotein
KO
K19719
collagen type II alpha
Organism
bta
Bos taurus (cow)
Pathway
bta04151
PI3K-Akt signaling pathway
bta04510
Focal adhesion
bta04512
ECM-receptor interaction
bta04518
Integrin signaling
bta04974
Protein digestion and absorption
bta05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
407142 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
407142 (COL2A1)
04518 Integrin signaling
407142 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
407142 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
407142 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
407142 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bta00536
]
407142 (COL2A1)
Glycosaminoglycan binding proteins [BR:
bta00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
407142 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
407142
NCBI-ProteinID:
NP_001001135
Ensembl:
ENSBTAG00000013155
VGNC:
27564
UniProt:
P02459
LinkDB
All DBs
Position
5:32283180..32313172
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGARG
LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG
PIGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagatatcaaggacatcgtaggacccaaggga
cctcctggacctcagggacccgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggtcctcccggcccccctggcccccctggccttggtggaaactttgct
gcccagatggctggtggatttgatgagaaggctggtggcgcccagatgggagtaatgcag
ggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggtgaacccggtgtttctggtcccatgggc
ccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggcgagagaggccctcctggccctcagggtgctcgtggtttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggtgagagtggttccccaggtgagaacggttctcca
ggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgccggcgct
gcaggtgctcgaggcaatgacggtcagccaggccctgcagggcctccgggtcctgtgggt
cctgctggcggtcctggctttcctggtgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcccgaaggcgcccagggtcctcgcggtgaaccgggtactcctgggtcc
cctgggccagctggtgctgctggcaaccctggaactgatggaatccctggagccaaggga
tctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccaaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagaacctggtggtgct
gggcccgccggtccccctggagaaagaggcgctcctggaaaccgtggtttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggcctcgctggt
cccaaaggcgccaacggtgaccctggccgtcccggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagcc
cctggtgaagacggtcgccctggacccccaggtcctcagggggctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa
ggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa
cgaggtttcccaggagaacgtggctcccccggttcccagggcctccagggggcccgcggt
ctccccggcactcctggcactgatggtcccaaaggcgcagctggcccagctggcccccct
ggggctcagggccctccaggtctgcagggcatgcccggtgagaggggagcagctggtatc
gccggacccaagggagacaggggtgatgttggtgagaaaggccccgagggcgcccccggg
aaggacggtggacgaggtctgactggccccattggcccccctggcccagccggagccaac
ggtgagaagggagaagttggaccccctggtcctgctggaactgctggtgctcgaggtgcc
ccgggtgaacgtggagagacaggcccccctggacctgctggattcgccggtccccctggt
gctgatggccagcctggtgccaaaggtgaacaaggagaagccggccagaaaggtgacgct
ggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
accggtcctaaaggagcccgaggtgctcaagggcccccgggagccaccggattccccgga
gcagctggccgcgtcggacccccaggctccaatggcaaccctggaccccctggtcctcct
ggtccttctggaaaagatggtcctaaaggtgctcgaggcgacagtgggccccctggccga
gctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gatgatggtccttctggtcccgatggtcctccaggtcctcagggtctggctggtcagagg
ggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggcctccccggcccc
tcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccctggc
cctgtgggtcctcctggcctgactggtcctgctggtgagcctggacgtgagggaagcccc
ggtgctgacggcccccctggcagagatggcgcagctggagtcaaaggtgaccgtggagag
accggtgccgtgggtgctcctggagcccctgggccccctggctctcctggccccgctggc
ccaattggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacctgca
ggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa
actggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtccttctggagaccagggtgcttccggtcctgcaggtccttcc
ggccccagaggtcctcctggtcccgtcggtccctctggcaaagatggtgctaacggaatc
cctggccccattggacctcctgggccccgtggacgttccggcgagactggccctgctggt
cctcctggaaaccctggaccccctggccctcctggcccccccggccctggcatcgacatg
tccgcctttgctggccttggccagagagagaaaggccccgatcctctgcagtacatgcgg
gccgacgaggcagccggcaacctgagacagcatgatgccgaggtggacgccacactcaag
tccctcaacaaccagatcgagagcctccgtagccccgagggctcccgcaagaacccagct
cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatc
gaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccggccagcgtccccaagaagaactggtggagcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctctcagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagctgctggcaacctcaagaaggctctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacatataccgttctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcccgtctg
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
