KEGG   Bos taurus (cow): 507620
Entry
507620            CDS       T01008                                 
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
  KO
K10897  partner and localizer of BRCA2
Organism
bta  Bos taurus (cow)
Pathway
bta03440  Homologous recombination
bta03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    507620 (PALB2)
   03460 Fanconi anemia pathway
    507620 (PALB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bta03400]
    507620 (PALB2)
DNA repair and recombination proteins [BR:bta03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     507620 (PALB2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     507620 (PALB2)
SSDB
Motif
Pfam: PALB2_WD40 BURP
Other DBs
NCBI-GeneID: 507620
NCBI-ProteinID: NP_001192544
BGD-bta: BT29999
Ensembl: ENSBTAG00000006405
VGNC: 32556
LinkDB
Position
25:complement(21268374..21293105)
AA seq 1186 aa
MEEPPGKTLSCEEKEKLKEKLAFLKREYTKTLARLQRAQRAEKFKNSLRRTVEEQDSSLQ
QEVSTQLTHTEPKNTVSPRDTLQINTHVDEETGEKTPSSLDIKPELFSSGRVSVEGSRIQ
GSDDNQEHFPFRVNGPDAKKRQNKLLGRRKKEERTYISQERESLSDIDSLILSGKRLKEQ
EKMNRENPRTPVTELRTYPLSSPKCAIPNSPAPVTETNVGSVLILPSTKPQRDVDALLRG
NDFPRATTLPLPTPSNSSNSQRLEHKCPKSNCELTTHSLRNISSASPVNLEVQKKKITVS
TDNPEVNKAGSTSGQAARSPNLEADNSCFINELTCDNLVENENQNLKEQNHTEMSLKSPN
DALGGRNESLLEKEVLSQSKNLSLEVISPVSTEDQIHSCTVLEGLLFPAEYYVRTTRRMS
GCQRKVALEAVIQSHLGVRKKGFKNKSMKSAKKFNVCNEKTKQSEIKVSDKHAEQPSSRS
PQKLLSLTEVSFSTDSTEDDFSRKTVTKPSGKKCRGRRKSACTSLLDHHELLLPTTGTSG
VKKSKEEIALHKDQNEKAIVHSKKRIKGKEGHCQKEDFLCYSNYAYFSSDDDAFSAPFRK
NRMLSLKHLSSFLKITDFQLPDEDFGSLKLEKLKSCSKKLMETFGSKVHGEGHLKGESYI
VVEEPSPKQSNIEKEGMEEELITLPGKAHPKMPSQRSQPRGKDLSSSILLFTPLNSVASD
DNDRLTAELCSPAFPILGATPAFGSQAHREKVSAEVVGQTCSPPRLSHLKATVSLAGNRK
QGNSWSRPSKLDSSQHVAGRAGQPSCDPDSGPQATTLPTESFTYEASQLQESQRHSAEQT
EIAEVPAWGSLHPGTLHVVSNLKNPSGSCSVDMSATWWEIAGFKEPCIITACEYVVSLWK
PLDAWQWEKIYSWHFTEFPVLQIVAVPDVCNLVCVALGNLEIREIRALLCSPDGKSEKQV
LLSSGNIKAVLGLAKRRLVSSSRTLCDQQVEMMTVAEDGGSKEKQLLMPPEETILTFAEV
QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDASYQASVCHKAYSEMGLLFVVLSHPCA
EENELSGSPVFQLIVINPKTTLSRGVMLYCLPHGQAGRFLEGDVKDHFAAAVLTSGTIAV
WDLLLGHCTALLPPVSGQNWSFVKWSGTDSHLLAGQKDGNIFVYRF
NT seq 3561 nt   +upstreamnt  +downstreamnt
atggaagagcctcctgggaaaaccctcagctgtgaagaaaaggaaaagttgaaagaaaaa
ttagcattcctgaaaagggaatacaccaagacattggcccgccttcaacgtgcccaaaga
gccgagaagtttaaaaattctcttaggagaacagtggaagaacaagactcctcactccag
caggaagtttcaacacagctaacccacacagaacctaaaaatacagtatctcctcgtgac
acgttgcaaatcaacacccatgtcgatgaagaaactggagaaaagacacccagctcactt
gacattaagcctgagttgtttagctctggacgtgtctcagtggaaggatcacgcatacaa
ggatcagatgataatcaggaacattttcctttcagggtcaatggccctgatgctaagaaa
aggcagaataagctgctggggagaagaaagaaagaggagagaacatatatttcacaggag
agagaatctctctctgacattgattcgctcatactctctggaaaaagactaaaggaacag
gaaaaaatgaatagagaaaatcctagaacacctgtaactgaactaagaacttaccccctt
tcaagtcctaaatgtgccattccaaattctccagcaccagttacagaaactaatgtaggg
agtgtattaattttaccaagcaccaaaccacagagagatgttgatgccctccttagagga
aatgatttccccagggcgactactcttcctctgcctacaccttcaaatagcagtaacagt
cagcgcctcgaacacaagtgtcctaaaagtaactgtgaacttactactcacagcttaaga
aacattagctctgcttcacctgtaaacttagaggtacagaagaaaaaaattactgtctct
acagataacccagaggtaaacaaagctggaagtacaagtggccaggcagctagaagtcct
aacttagaggcagataattcatgttttataaatgaactcacttgtgataacttagtagaa
aatgaaaaccaaaacttaaaagaacaaaatcacacagagatgtctcttaaatctcccaat
gatgctctcggtggtagaaatgaaagtcttctggaaaaggaagttctaagtcagtctaag
aatcttagcctggaagtaatttctcctgtttctacagaagatcaaatacattcttgcaca
gtgcttgaaggccttctctttcctgcagaatattacgttaggacaacacggcgcatgtca
ggttgccagaggaaagtagcactggaggctgtaattcagagtcatttaggtgtcagaaaa
aaaggctttaaaaataagagtatgaaatctgctaaaaaattcaatgtttgcaacgaaaaa
actaagcaaagtgaaattaaggtgtctgacaaacacgcagaacaaccaagttcaagaagt
ccccagaaactgctctcattaactgaagtcagcttttccactgactccacagaagatgac
ttttctaggaagacagttaccaagccatcaggtaaaaaatgcagaggaagaagaaagtca
gcgtgcacctctctgttagatcaccatgaactacttttgccaactactggcacatcaggt
gttaagaagtccaaggaagaaattgccttgcacaaagatcagaatgaaaaggcaattgtt
cacagtaagaagagaattaaaggaaaggaaggtcactgtcaaaaagaggacttcctttgt
tacagtaattacgcttatttctcttcggatgatgatgctttcagtgctccatttcgtaag
aacagaatgctaagtttaaagcatctgtcgtcttttctcaaaatcacagactttcagtta
cctgacgaagactttgggtctcttaagcttgaaaaactgaagtcctgctcaaaaaagctg
atggagacttttggatcaaaagtacatggagaggggcatcttaaaggggaaagttacatt
gttgtggaggaaccaagccctaaacaaagcaatatagaaaaggagggcatggaagaggaa
ctaattaccctaccaggaaaggcacatcctaaaatgccaagccaaagaagccagcctcgg
ggaaaggacctttcttcatccattttactttttactcctttgaattctgttgcctctgat
gataatgacagactgacagcagagctgtgctcacctgctttccccatattaggcgctact
ccagcttttggctcccaagctcacagagaaaaggtgtctgcagaggtggttggacaaacc
tgctctccaccccgtctttctcacttaaaagccacagtcagcctggctggcaatcgtaaa
caaggcaacagctggagcagaccctcgaaattagatagcagccagcatgtggcaggaaga
gcaggacagccttcctgtgaccctgactctggtccccaagcaacaactctacccaccgag
tctttcacctatgaagcaagtcagctccaggaatcacagagacattctgctgagcagact
gaaatagcagaggttcctgcttggggtagcttacacccgggcaccctacacgtggtttca
aacttaaagaatccttcaggttcttgttctgtggatatgagtgccacgtggtgggaaata
gctggtttcaaagagccgtgtatcataactgcttgtgaatacgtcgtttctctttggaaa
cctctggatgcttggcagtgggaaaaaatttattcctggcacttcacagagtttccggta
ttacagatagttgcagtgcctgatgtttgcaatcttgtgtgtgtggctttgggaaatttg
gaaatcagagaaatcagggcactactttgttctcccgacggtaaaagtgaaaagcaagtg
ctcctgagttctggaaatataaaagctgtgcttggcctggcaaagaggaggctcgtcagt
agcagtaggaccctttgtgatcagcaagtcgaaatgatgacagttgccgaagatggagga
agcaaagaaaaacagcttttgatgccccctgaggagaccatactaacttttgctgaggtt
caagggatgcaggaagctctgcttggtaccactataatgaacaacattgttatttggaac
ttaaaaactggtcagctcctgaaaaagatgcacatcgatgcttcctaccaagcttcagtc
tgccacaaagcttactctgaaatggggctcctgtttgttgttctgagtcacccttgcgcc
gaagagaacgagttatcgggaagccctgtgtttcagctgattgtgattaacccgaagaca
accctgagtaggggtgtgatgctctactgccttcctcacgggcaagctggaaggttcctg
gaaggcgacgtgaaagaccatttcgcagcagcggtattgacttctggaaccattgccgtt
tgggacttactcttgggtcactgcactgctctccttcctcctgtctctggccagaattgg
tcttttgttaaatggtcaggtacagattctcatttgttggctggacaaaaagatggaaat
atatttgtataccgcttctaa

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