Bos taurus (cow): 510177
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Entry
510177 CDS
T01008
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
bta
Bos taurus (cow)
Pathway
bta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
510177 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bta03041
]
510177 (SF3B1)
03036 Chromosome and associated proteins [BR:
bta03036
]
510177 (SF3B1)
Spliceosome [BR:
bta03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
510177 (SF3B1)
Complex B
510177 (SF3B1)
Complex C
U2 SnRNP specific factors
510177 (SF3B1)
Chromosome and associated proteins [BR:
bta03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
510177 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
510177
NCBI-ProteinID:
NP_001179923
BGD-bta:
BT11693
Ensembl:
ENSBTAG00000008915
VGNC:
34509
UniProt:
F1MX61
LinkDB
All DBs
Position
2:complement(85946144..85984071)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKNVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagatccgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacgggttattatgac
caggaaatttacggtggaagtgacagcaggtttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgagcatagacctccgaagattgcagatcgggaagatgaatacaaa
aagcacaggcggaccatgataatttcccctgagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaggctggagaa
ttaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacggaaacgacgttgg
gatcaaacagctgatcagactcctggtgccactccaaaaaagctatcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgaaacaccaggtcgtgcaaag
ggaagtgaaactcctggagcaaccccaggctcaaaaatatgggatcctacccctagtcac
acacctgcgggagctgctactcctggacgaggcgatacaccaggccacgcaacaccaggc
catggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gattccattggtgaaacgccaactcctggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacccctggaaagacaccaatt
ggcacaccagccatgaacatggccacccctactccaggtcacataatgagtatgactcct
gagcagcttcaggcttggcggtgggagcgagaaattgatgagagaaatcgcccgttgtct
gatgaagaattagatgctatgttcccagaaggatataaggtacttccccctccagctggc
tatgttcctattcgaactccagctcgaaagctgacagcaactccaacacctttgggtggt
atgacaggtttccacatgcaaacagaagatagaactatgaaaaacgttaatgaccaacca
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgtcgatgaatcaactcttagtccagaagagcaaaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggaacacctcctatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctgctgatg
tcacctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgacgacttagttcgaccatatgtacacaagatcctagtggtcattgaacca
ttgttgattgatgaagattactacgctcgagtggaaggcagagagattatttctaatttg
gcaaaggctgctggactggctactatgatctctaccatgagacctgatatagataatatg
gatgagtatgtccgtaacacaacagctagagcttttgctgttgtagcctctgctctgggc
attccttcattattgcctttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcg
agacacactggtataaagattgtacagcagatagctattctcatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtcttgtggatgagcagcaaaaa
gttcggaccattagtgctttggccattgctgccttggctgaagcagcaactccttatggt
attgaatctttcgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtcttgccgctttcttaaaggctattggctatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaattcttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctaaaggtggtaaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagatccttcctcccttttttaaacacttttggcaa
catagaatggctttggatagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtcggtgcagcagaaattatatccaggattgtggatgatctaaaagatgaa
gctgaacagtacagaaaaatggttatggagacaattgagaaaattatgggcaacttggga
gcagcagatattgatcataaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaacggctttggtacagtggtcaatgct
ctcggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagttaggcagcaggcagctgacttgatctctcgaacagctgtt
gtcatgaagacttgtcaagaggaaaaattgatggggcatttgggtgttgttttgtatgag
tatttgggtgaagagtaccctgaagttttgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
acccccatcttaaagaataggcatgaaaaagtacaggagaattgtattgatcttgttggg
cgtattgctgataggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gaacttttagagctcttaaaagcacacaaaaaagctattcgtagagccacagtcaataca
tttggttatattgcaaaggccattggccctcatgatgtattggctacacttctcaacaac
ctaaaagttcaagaaaggcagaacagagtttgtacaactgtggccatagctatcgtcgct
gaaacatgttcacccttcacagtactacctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttaaagtcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacaccactacttgaggatgctttaatggatagg
gaccttgtacacagacagactgctagtgcagtggtgcaacacatgtcacttggggtttat
ggatttggttgcgaagattcgctgaatcacttgttgaactatgtatggcccaatgtgttc
gagacatctccccatgtaattcaggcagttatgggggccctggagggtctgagagttgct
attggaccatgtagaatgctacagtattgtttacagggtttgtttcacccagcccggaaa
gtcagagatgtgtattggaaaatttacaactccatctacatcggttcacaggatgctctc
atagcacattacccaagaatctacaacgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
