Bos taurus (cow): 510529
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Entry
510529 CDS
T01008
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bta
Bos taurus (cow)
Pathway
bta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
510529 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bta03041
]
510529 (SNRNP200)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
510529 (SNRNP200)
Spliceosome [BR:
bta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
510529 (SNRNP200)
Complex C
U5 SnRNP specific factors
510529 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
510529
NCBI-ProteinID:
NP_001193092
BGD-bta:
BT17852
Ensembl:
ENSBTAG00000000848
VGNC:
35068
UniProt:
E1BH78
LinkDB
All DBs
Position
11:complement(2375182..2400418)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMATQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDAIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaaccgcccgtagcctgcagtacgagtacaaagcgaactcgaatcttgtt
ctccaagctgatcgctctctcattgaccggacccgccgggatgaacccacaggagaagtg
ctatccctggttgggaagctggagggtacccggatgggagataaggctcaacgaaccaaa
ccacagatgcaagaggaaagacgagctaagcgaagaaagcgtgatgaggaccggcatgac
atcaacaagatgaagggctatactctgctctcagagggcatcgatgaaatggtgggcatc
atctataagcccaagaccaaggagacccgggagacctatgaagtgctgctcagtttcatc
caggctgcccttggggaccagccacgtgatattctttgtggggcagcagatgaagttctc
gctgttttaaagaatgaaaagcttcgggacaaggaaaggagaaaggagattgatctgctg
ctgggtcagacagatgataccagataccatgtgctagtaaacttgggcaaaaagatcaca
gactacggtggagacaaggagatccagaatatggacgacaacattgatgagacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtacggggaggtt
cgtgaagaggcgtctgacgacgacatggaaggggatgaggccgtggtgcgctgcaccctc
tcagctaatcttgtggcctcaggggaactgatgagttccaagaagaaggatctgcaccct
cgggacattgatgccttttggcttcagcggcagctcagtcgcttctacgatgatgccatt
gtgtcacagaagaaggcagatgaggtgttggagattttgaagacggccagcgacgaccgg
gagtgtgagaaccagctggttctgctcctcggtttcaacacttttgattttatcaaggtg
ttgcggcagcacaggatgatgattttgtactgcaccttgctggccagtgcacagagtgaa
gctgaaaaggagaggatcatgggcaagatggaggctgacccagagctgtccaagttcctc
taccagctgcacgaaacggagaaggaggacctaatccgggaggaacggtcccgcagagag
cgagtacgtcagtcccggatggacacggacctggaaaccatggatctggaccagggcgga
gaggcactggctccgcggcaggttctggacttggaggaccttgtatttacccaggggagc
cactttatggccaacaaacgctgccagcttcctgacgggtccttccggcgccagcgcaag
ggctacgaagaggtgcacgtgcctgccctgaagcccaagcccttcggctctgaagaacaa
cttcttccagtggagaagctgcccaagtatgcccaggctggctttgagggcttcaaaacc
ctgaatcggatccagagtaagctctaccgtgccgccctggagacggatgaaaatctgctg
ctctgcgctcctacaggtgccgggaagaccaacgtggccctgatgtgtatgctccgagag
ataggcaagcacattaacatggacggcaccatcaacgtggacgacttcaagatcatctat
atcgcccccatgcggtctctggtgcaggagatggtgggcagttttggaaagcgcctggcc
acatatggcatcactgttgcggagctgactggcgaccaccagctgtgtaaggaggagatc
agcgccacccagatcatcgtctgcacccccgagaagtgggacatcattacccgcaagggc
ggggaacgcacctacacccagctcgtgcggctcgtcatcctggatgagatccatcttctc
catgatgacagaggtcctgtcctagaagcgttggtggccagggccatccggaacattgaa
atgacccaggaggacgtccgcctcattggccttagcgccaccctccccaactatgaagat
gtggctacctttctacgtgtagatcctgccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctagaacagacgtatgtgggcatcacggagaagaaagccatcaagcgt
ttccaaatcatgaatgaaattgtctatgagaaaatcatggaacatgctggaaaaaatcag
gtactggtatttgtgcactcccggaaggagaccgggaagacagccagggccatccgggac
atgtgcctggagaaggacacgctgggtctgtttctgagagagggctcggcctccacagag
gtcctccggacagaagctgagcagtgcaagaacctggagctgaaggacctgctgccctat
ggctttgctatccatcacgcgggcatgaccagagttgaccggacacttgtcgaggatctc
tttgctgataaacacatccaggttttagtttccacggcaaccctggcttggggtgtgaac
ctccctgcccacaccgtcatcatcaaaggcacccaggtgtacagtcccgagaagggccgc
tggactgagctgggagcgctggacatcctgcaaatgctgggacgagcaggccggccgcag
tacgacaccaagggcgaaggcatcctcatcacctcgcacggggagctgcagtactacctg
tcgctgctcaaccagcagcttcccattgagagccagatggtgtccaagctgcccgacatg
ctcaacgccgaggtcgtgctggggaacgtgcagaacgcaaaggatgcagtgaactggctg
ggctacgcctacctgtacatccgaatgctccggtccccgaccctctatggcatctctcat
gatgacctcaagggagacccactgctagaccagcgccgactggatctggttcataccgct
gccttgatgctggataagaacaacctggtcaagtacgacaagaagacaggcaacttccag
gtgacagaactgggccgtatagccagccactactacatcaccaatgacacggtgcagact
tataaccagcttctaaagcccaccctgagcgagattgagctcttcagagtcttctcgttg
tcttcagagttcaagaacatcactgtgagagaggaggagaaactggagctgcagaagttg
ctggagagggtgcccatccccgtcaaggagagcattgaggagcccagtgcaaagatcaat
gtgctgctccaggctttcatctcgcagctgaagctggagggctttgcgctaatggccgac
atggtctatgttactcagtcggctggccgcttgatgcgggccatctttgaaattgtcctg
aaccgcgggtgggcacagcttacagacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaagctccctgaggaggtcgtg
aagaagattgagaagaagaacttcccctttgagcgtctgtatgacctgaatcacaatgag
ataggtgagctcatccgcatgcccaagatggggaagaccatccacaagtatgtccacctc
ttccccaagctggagctgtcggtgcacctccagccaatcacgcgctccaccctgaaggtg
gagctgaccatcacgcccgacttccagtgggatgagaaggtccacggttcgtcagaggcc
ttctggattcttgtggaagacgtggacagtgaggtgatccttcaccacgagtacttcctg
ctcaaggccaagtatgcccaggacgagcacctcatcacgttcttcgttcccgtctttgag
ccgctgccccctcagtacttcatccgtgtggtgtctgaccgctggctttcttgtgagacc
cagctgcccgtctctttccggcacctgatcctgccagagaagtacccgcccccaaccgag
ctgctagaccttcagcccttgcctgtgtctgccctgagaaatagcgcctttgagagcctc
taccaggataaatttcctttcttcaaccccatccagacccaggtgttcaacaccgtgtac
aacagcgatgacaacgtgtttgtgggggcccccacgggcagcgggaagaccatctgtgcg
gagtttgccatcctgcggatgctgctgcagaactcggagggccgctgtgtctacatcacc
cccatggaggccctcgctgaacaggtgtacatggactggtacgagaagttccaggacagg
ctcagcaagaaggtggtgctcctgacgggggagaccagcacggacctgaagctcctgggc
aagggcagcgtcatcgtcagcacgcccgagaagtgggacatcctctcccggcgctggaag
cagcgcaagaacgtgcagaacattaacctcttcgtggtggacgaggtccacctcatcggg
ggcgagaacgggcccgtcctggaggtcatctgttcccggatgcgctacatctcctcccag
atcgagcggcccatccgcatcgtggctctcagctcctcgctgtccaacgcgaaggacgtg
gcccactggctgggctgcagcgccacctccaccttcaacttccacccgaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctg
tccatggccaagcccgtgtaccacgccatcaccaagcactcgcccaagaagcccgtcatc
gtcttcgtgccctcccgcaagcagacgcgcctcaccgccatcgacatcctcaccacgtgc
gcagccgacatccagcgccagagattcctgcactgcactgagaaggacctgatcccgtac
ctggagaagctgagcgacagcacgctcaaggagacgctgctgaacggagtcggctacctg
catgaggggctcagccccctagagcggcgcctggtggagcagctcttcagctcaggggcc
atccaggtggtggtcgcttctcggagtctctgctggggcctgaatgtggcggcgcacctg
gtgatcatcatggacacccagtactacaacggcaagacccacgcgtacgtggattacccc
atctacgatgttctgcagatggtgggccatgccaaccgccctctgcaggatgatgagggg
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaagaagttcttgtatgag
cctttgccggtggagtctcacctggaccactgcatgcacgaccacttcaacgccgagatc
gtcaccaagaccatcgagaacaagcaggacgccgtggactacctcacctggaccttcctg
taccgccgcatgacgcagaaccccaactactacaacctgcagggcatctcccatcgtcac
ctgtctgaccacttgtcggagctcgtggagcagaccctgagtgacctggagcagtccaag
tgcatcagcgtcgaggacgagatggacgtggcgcccctgaacctgggcatgatcgccgcc
tactattacatcaactacaccaccatcgagctcttcagcatgtccctgaacgccaagacc
aaggtgcgagggctcatcgagatcatctccaacgcggctgagtatgagaacatccccatc
cggcaccacgaggacagcctcctgcggcagctggcccagaaggtcccccacaagctgaat
aaccctaagttcaacgacccacacgtcaagaccaacctgcttctgcaggcccacctgtcc
cgcatgcagctgagtgccgagctgcagtcggatacagaggagatcctcagcaaggccatc
cggctcatccaggcctgtgtagacgtcctctctagcaatgggtggctcagccccgccctg
gcggccatggagctggcccagatggccacccaagccatgtggtccaaggactcctacctg
aaacagctgccgcacttcacctccgagcacatcaaacgttgcacagacaagggggtggag
agtgttttcgacatcatggaaatggaggacgaagagcgcaacgccttgctgcagctgtcg
gacagccagatcgcggacgtggcccgcttctgtaaccgctaccccaacatcgagctgtcc
tacgaggtggtggacaaggatgccatccgcagtggcgggccagtcgtcgtgctggtgcag
ctggagcgggaggaggaagtcacgggccctgtgatcgcgcctctcttcccgcagaaacgt
gaagagggctggtgggtggtgatcggagacgccaagtccaacagtctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaaactcgacttcgtggccccggccaccggc
gcccacaactacaccctgtacttcatgagtgacgcttacatggggtgtgaccaggagtac
aaattcagcgtggatgtgaaagaagccgagacagacagtgactcagattga
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integrated database retrieval system
