KEGG   Bos taurus (cow): 511951
Entry
511951            CDS       T01008                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
bta  Bos taurus (cow)
Pathway
bta03420  Nucleotide excision repair
bta04120  Ubiquitin mediated proteolysis
bta05161  Hepatitis B
bta05170  Human immunodeficiency virus 1 infection
bta05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    511951 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    511951 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    511951 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    511951 (DDB1)
   05161 Hepatitis B
    511951 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bta04121]
    511951 (DDB1)
   03400 DNA repair and recombination proteins [BR:bta03400]
    511951 (DDB1)
Ubiquitin system [BR:bta04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     511951 (DDB1)
DNA repair and recombination proteins [BR:bta03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      511951 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      511951 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 511951
NCBI-ProteinID: NP_001073731
BGD-bta: BT29584
Ensembl: ENSBTAG00000021569
VGNC: 27941
UniProt: A1A4K3
LinkDB
Position
29:complement(39814485..39842339)
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgcgtgacc
ggacattttacttcagcggaagacttgaacctgttgattgccaaaaatacgagattagag
atctatgtggtcactgctgaggggcttcggcccgtcaaagaggtgggcatgtatgggaag
attgctgtcatggagcttttcaggcccaagggggagagcaaggacctactgtttatcctg
acagctaagtacaatgcctgcatcttggagtataagcagagtggcgagagcattgacatc
ataactcgagctcatggcaatgtgcaggaccgaattggccgcccctcagagacgggcatt
attggcatcattgaccccgagtgccgaatgattggcctgcgactctatgatggcctattc
aaggttattccactagaccgggacaataaagagctcaaggcctttaacatccgcctggag
gagttgcatgttatcgacgtcaagttcttatatggttgccaagcgcctaccatctgcttt
gtctaccaggaccctcaggggcggcacgtaaaaacttatgaggtgtctctccgagagaag
gagttcaataagggcccttggaaacaggaaaacgtagaagctgaagcgtccatggtgatt
gcagtcccggagcccttcggaggtgccatcatcattggacaggagtcgattacgtatcac
aacggtgacaaatacctggcaattgcccctcccatcattaagcaaagcacaattgtgtgt
cacaatcgagtggaccccaatggttctcgctatctgcttggagacatggaaggacggctc
ttcatgctgcttttggagaaggaggaacagatggatggcactgtcaccctcaaggatctc
cgtgtggaactccttggggagacctctattgctgagtgcttgacgtaccttgacaatggt
gttgtgtttgttggttctcgccttggtgattcccagcttgtgaagctcaatgttgacagc
aatgaacaaggctcctacgtagtggccatggaaacctttaccaatttaggacccattgtg
gacatgtgcgttgtggacctggagaggcaggggcagggacagctggtcacttgctctggg
gcattcaaggaaggttccttgcgaatcatccggaacggaattggaatccacgagcatgcc
agcattgacttgccaggcatcaaaggcctgtggccactgaggtctgatcccaaccgggag
accgatgacactttggtgctctcttttgtgggccagacaagagttctcatgttaaatgga
gaggaagtggaagaaaccgaactgatgggttttgtggacgatcagcagacttttttctgt
ggcaacgtggctcatcaacaacttatccagatcacttcagcatctgtgaggctggtctct
caagagcccaaagcactcgtcagtgagtggaaggagcctcagggcaagaacatcagcgtg
gcctcctgcaacagtagccaggtagtagtcgccgtggggagggccctctactacctgcag
atccatcctcaggagctccggcagatcagccacacagagatggaacacgaagtggcctgc
ttggacattacccctctaggagacagcaatggaatgtcccctctttgtgccatcggcctc
tggacagacatctcagcccgaattgcaaagctgccctcttttgagctactgcacaaagag
atgctgggtggagagatcattccccgttccatcctgatgaccacctttgagagcagtcac
tacctcctttgtgccttgggagacggagcactcttctactttgggctcaacatcgagaca
ggcctgttgagtgaccgtaagaaggtgactctgggcacccagcccacggtattgagaact
ttccgttctctttcaaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaagtgaactacatgtgt
cccctcaattcagatggctatcctgacagcctggcactggccaacaacagcactctcacg
attggcaccatcgacgagatccagaagttgcacattcggacggttcccctatatgaatct
cccaggaagatctgctatcaggaggtgtcccagtgcttcggggtcctctccagccgcatt
gaagtccaggacacgagtgggggcacaactgctctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacagcccctcacgagacc
tcctttggagaagaggtggaggtgcataacctccttatcattgaccagcacacctttgaa
gtgcttcatgcccaccagtttctgcagaatgagtatgccctcagcctggtctcctgcaag
ttgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtacccagaagag
gcagagcccaagcagggtcgtattgtggtctttcagtattcagatggaaaactacagact
gttgctgaaaaggaggtgaagggggccgtgtactccatggtagagtttaacgggaagctg
ttagccagcatcaacagcacggtgcggctttatgagtggacgaccgagaaggagctgcgc
acggagtgcaaccactacaacaacatcatggcgctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctcggtgctcctgctggcctacaagcccatggagggc
aacttcgaagagattgctcgagactttaaccccaactggatgagtgctgtggaaatcttg
gatgatgacaatttcctgggggctgaaaatgcctttaacttgtttgtgtgtcagaaggat
agcgctgccaccacggatgaggagcggcaacacctccaggaggttgggctcttccacttg
ggcgagttcgtcaacgtcttttgccacggctctctggttatgcagaacctgggcgagact
tccacgcccacgcagggctcggtgctcttcggcacggtcaatggcatgattggcctggtg
acctcattgtcagagagctggtacaacctcttgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagattgagcactccttttggagatcctttcatactgaacga
aaaacagaaccagccaccggcttcatcgatggcgacttgattgagagtttcctggatatc
agccggcccaagatgcaggaagttgtggcaaacctacagtatgacgatggcagcgggatg
aagcgagaggccactgcagatgacctgatcaaggtggtggaggagttaactcggatccat
tag

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