Bos taurus (cow): 513171
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Entry
513171 CDS
T01008
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bta
Bos taurus (cow)
Pathway
bta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
513171 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
513171 (EDC4)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
513171 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
513171 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
513171
NCBI-ProteinID:
XP_002694948
Ensembl:
ENSBTAG00000006417
VGNC:
28321
UniProt:
E1BJH1
LinkDB
All DBs
Position
18:35370778..35381912
Genome browser
AA seq
1400 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAENQRPSNAYNGDLNGLLVPDPLCSGDSA
STNKPGFRAMPPINLQEKQVICLLGDDSSTGIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALINGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRTNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSPVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPSHS
THEDFPFGESRPELGSEGLGSATHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSASLQQIAASPSSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPKLQ
LDGGLTMSSSSLQASPRGLLPSLLPGPADKLTPKGSGQVPTAASALALELQEVEPLGLPQ
ASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEGLEPDSMASAASALHLLSP
RPRPGPELGPQLSLDGVPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCSSL
AESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGNFGTKVPT
PRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSLGSRLTEHQVAETPEDWPALIWQQQREL
AQLRHSQEELLQRLCAQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQE
QLTQQLSQALSSAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVESSM
KENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSF
RLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVGTLQGATEQMAATVSGSVRAEVQ
HQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHLDC
QAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSL
IQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSL
GKAARRLSLMLHGLMTPSLP
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttgtgcgagcatcgacatagaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggccggcgggaggccccagtgcagagaaccaacgaccatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaggtgacagtgct
tcaacaaacaagcctggtttccgagccatgccacctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccactggcattggaattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
attcagcctgtcgccaagtatgactgggagcagaaatactactatggcaacttgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcaatggtg
cgagtgatcagtgtcagcacttcagagcggaccctgctcaaaggcttcacaggcagcgtg
gctgatctggcctttgcacacctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtatggcgcttggccctgattaatggcaaaattcaagaggagatcttggtc
cacatccgccagccagagggcactccgctgaaccacttccgcaggatcatctggtgcccc
ttcatccctgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgcaccaaccacagcacctgg
cctgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ttgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagtcatgatggc
ttcgtcaagttctggcagatctacatcgagggacaggatgagccacggtgtttacatgag
tggaagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccctttctggagattcctcattactggcgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagcccagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcggaa
tacctgatcctcagtgatgtacagcggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggccgggcctgcttcagctccatctctgagttccttctaacccaccctgta
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacacagaggtgctgcct
gccgaggaggagaatgacagccttggggccgacgggacccatggagcaggtgcaatggag
tctgcagccggtgtgctcatcaagctcttttgtgtgcacactaaggcattacaggacgtc
cagatccgctttcagccacagctgaaccctgacgttgtggccccactcccctcgcactct
acccatgaagactttccatttggagagtctcggccagagctgggctcagagggcctggga
tcagctactcatggctcccagcctgacctccgacgtatcgtggagttgcctgcaccagct
gacttcctcagtctgagcagtgagaccaagcccaagctgatgacacctgacgccttcatg
acgcctagcgcctccctgcagcagattgctgcatctcccagcagcagcagcagcagcagc
agcagtagcagcagcagcagctcctctctgacagccgtgtctgccatgagcagtacttcg
gccgtggacccctccttgcccaggccacctgaggagctgaccttgagccccaagctacag
ctggatggtggtctgaccatgagcagcagcagcctgcaggcaagcccacgtgggctcctg
cccagcctgctcccaggtccggctgacaaactgactcctaaagggtctggtcaggtgcct
actgctgcctctgcactcgccctggagctgcaggaagtggaacccctggggctgcctcag
gcttcccccagccgcacccgctcccccgatgttatctcctcagcctccactgccttgtcc
caggacatccctgagattgcatctgaggcgctgtcccgtggctttggcgcctctgctcct
gagggcctggagccagacagcatggcctcagcggcctcggcgctccacctgttgtctcca
cggccccggccagggcccgagctcggcccccagcttagcctggatggggtccctggggat
ggggatcggcatagtaccccttccctcctggaggcagccttgacccaggaggccacagcc
cctgacagtcaggtctggcctacagctccagacatcactcgcgagacctgcagcagcctg
gcagagagcccccggaatggcctccaggaaaagcacaagagcctggccttccaccgacca
ccttatcacctgctgcagcaacacgacagccaggacgccagtgccgagcaaagtgaccat
gatgacgaggtggccagcctcgcctctgctgcagggaactttggcaccaaagtgcccact
ccacgtcttccagccaaggactggaagaccaagggatcccctcgggcctcacccaagctc
aagagaaagggcaaaaaggatgatggggattcatccttgggatcccggctcacagagcac
caggtggcagaaacccctgaggactggccggcactgatctggcagcagcagagagagctg
gcacagctgcggcacagccaagaagagctgctgcagcgcctgtgcgcccagcttgaaggc
ctgcagagcaccgtcacaggccacgtggagcgagccctggagtcaaggcacgagcaggag
cagcggcgactggagcgggccctggccgaggggcagcagcggggtgggcagctgcaggag
cagctgacacagcagctatcccaggcgctgtcttcagcggtggcagggcggctggagcgc
agcgtacgagacgagatcaagaagacggttcctccatgtgtctcccggagtctggagccc
gtggctggccagctcagcaactcggtggccaccaaactcacagccgtggagagtagcatg
aaagagaacatctctaagctgctcaagtccaagaacttgacagatgccattgcccgagca
gccgcagacacattacaggggccaatgcaggccgcctaccgggaagccttccagagtgtg
gtcctgcccgccttcgagaagagctgccaggccatgttccagcagatcaatgacagcttc
cgactgggcacacaggagtacttgcagcagttggagagccacatgaagagccgcaaggca
cgagagcaggaggcacgggagcctgtgctggcccagcttcggggcctggtcggcaccctg
cagggggccacggagcagatggcggccactgtgtctggcagcgttcgggctgaggtgcag
caccagctgcatgtggccgtgggcagcctgcaggaggcgattctagcacaggtacagcgc
atcgtgaagggcgaggtgagtgtggctctcaaggagcagcaggccgccgtcacctctagc
atcatgcaggccatgcgctcagccgccggcacacctgtccctgctgcccacctcgactgc
caagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttc
cagcaggccctgacagctgccgacctgaacctggtgctatacgtgtgtgaaacagtggac
ccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactcctttctctc
atccagcaactggcctctgatcttggcactcgaactgacctcaagctcagctacctggaa
gaggctgtaatgcacctggaccacagtgaccccatcactcgggaccacatgggctccgtc
atggctcaggtgcgccagaagctcttccagttcctgcaggcggagccacacaactcactt
ggcaaagcagcccggcgtctcagcctcatgctgcacggccttatgacccccagcctccct
tag
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integrated database retrieval system
