Bos taurus (cow): 518970
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Entry
518970 CDS
T01008
Symbol
SHANK1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
bta
Bos taurus (cow)
Pathway
bta04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
518970 (SHANK1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
518970
NCBI-ProteinID:
XP_024834507
BGD-bta:
BT23611
Ensembl:
ENSBTAG00000013107
VGNC:
34585
LinkDB
All DBs
Position
18:complement(56747256..56798494)
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AA seq
2169 aa
AA seq
DB search
MTHSPASSEDEERHSVSECPEGGSESDSSPDGPGRGPRGTRGRGSAAPGSLASIRGLQSR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGTGLTVPPALLRANSDTSMALPDWMVFAAPGTSSAGAPGPTAGPQGQAQPAAPSAK
LSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRI
GWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYIIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPPP
AISLRSKSMTSELEEMEYEQQPPPMPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG
PGGLASLGKHRPKGFFTTESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDDRPY
LAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSGG
THPASSPASFDGPAPPDTRIGSRDKSLYHSGPLPPPHHHPPHHHHHHAPPPQPHHHHAHP
PHAPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGALSPSHHGSGGGAGGPSQAP
ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVVEGEPQKGGGLPPAPSPTSPASPQ
PPPPPAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPSQPEAAGGGVGGGGS
SAPSPAPAVSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRST
LFLSTDAGDEDGGDSSLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGYAGYAA
GGRAYGGSSAFTSFLPPRPLVHPLTGKXLDPASPLGLALAARERALKESSEGGGPPQPPP
RPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPP
AARRSLLHRLPPTAPGVGPLLLQLGPEPPAPHPGVSKPWRSGAPPEEPERLPLHVRFLEN
CQPRAGGAGGRGPPSEDGPGVPPPSPRRSVPPSPTSPRGSEENGLPLLVLPPPAPSVDVE
DGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPTPTTPLPSVPPPAVAAAPPTL
DSTASSLTSYDSEVATLTQGAPAAPGDPPPPGPPAPAAPAPPAPQPGPDPPPGTDSGIEE
VDSRSSSDHPLETISSASTLSSLSAEGGGGAGGGTGGVGGSGGASVAGGPELLDTYVAYL
DGQAFGGSGTPGPPYPPQLMTPSKLRGRALGAGGGLRPGPGGGLRDPITPTSPTVSVTGA
GTDGLLALSGCPGSSTAGVAGGPVAVEPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPLP
GPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGSGDSHHGGASYV
PERTSSLQRQRLSEDSQSSLLSKPVSSLFQNWSKPPLPPLPTGTAVSPSAAAAPGATSPS
ASSSSTSARHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGL
FDIRGSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGA
KPLGFWTKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNID
RALKFFLER
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgtcaagcgaggacgaagaacgccacagtgtcagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcccgggagaggcccccgggggacc
cggggccggggcagcgcagcacctggtagcctggcctcgatccgaggcctccagagccgc
tccatgtccgtcccagacgacgcccacttcagcatgatggtttttaggatcggcatccct
gaccttcaccagacaaaatgcctgcgcttcaaccccgatgccaccatctggacggccaag
cagcaggtgctctgtgccctgagcgagagcctccaggacgtgctcaactatggcctgttc
cagccagccacctcgggccgggacgccaacttcctggaggaggagcggctgctgcgggag
tacccccagtccttcgagaagggggtgccctacctggagttccgatacaagacccgtgtt
tacaagcagaccaacctggatgagaagcagctggccaagttgcacacgaagacggggttg
aagaagttcctggagtacgtgcagctcgggacatccgataaggtggcacggctgctggac
aaggggctggaccccaattatcatgactcagattcaggagagacccccctgacgctggct
gctcagaccgaaggctccgtagaggtgattcgaaccctatgcctgggcggggcgcacatt
gacttccgggcccgggatggcatgaccgcgctacacaaggccgcctgtgcccgccactgc
ctcgctctgacggcgctcctggatcttgggggctcccccaactacaaggaccgccgaggg
ctgactcccctgttccacacggctatggtggggggtgacccccgctgttgcgagctgctc
ctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagattcaccag
gcctgccagcgcggtcactctcagcatctggaacatctgctcttctacggagctgagcct
ggagcccagaacgcctcggggaacacggccctacacatctgtgccctctacaataaggag
acgtgtgctaggatccttctctatcgaggggccaacaaggatgtcaagaataacagtgga
cagacccccttccaggtggcagtgatcgctgggaattttgaactcggggagctgatccga
aaccatcgagaacaggacgtggtgcccttccaggagtcccccaaatatgcagcccggcga
cggggacccccgggcacagggctgacggtgccccccgcactgctgcgggccaacagtgat
accagcatggccctgcccgactggatggtgttcgccgccccagggacctcgtctgcgggg
gcccccggccctaccgcagggccccagggccaggcacagcccgccgcccccagcgccaag
ctcagcagcgggaccctgcgaagtgccagcagcccccggggcgcccgggcccgctcccca
tcccgcgggaggcaccctgaggaggccaagcgccagccccgtggacggcccagctccagc
gggacaccccgggaagggccagccgggggcacggggggctccgggggccccgggggctcc
ctgggcagccgcgggagacgcaggaagctctactcggcagtccctggacgctccttcatg
gctgtgaagtcctaccaggcccaagccgagggggagatctccctgagcaagggcgaaaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgcatc
ggctggttcccctctgactgcctggaagaggtggccaaccgctcccaggaagcaaagcaa
gaaagccgaagtgacaaggcaaagagactcttccggcattataccgtgggctcctacgac
agctttgatgccccaagcttgatggatgggattggcccagggagcgattacatcatcaaa
gagaagacagtcctgctgcagaagaaggacagtgaggggtttgggttcgtgctccggggt
gccaaggcgcagacccccatcgaggagttcacccccaccccagccttcccggcactgcag
tatctggagtcagtggacgagggcggcgtggcatggcgggctggactgcgaatgggagac
ttcctcatcgaggtgaacgggcagaacgtggtgaaggtcggccaccggcaggtggtgaac
atgatccgccaagggggcaacacgctgatggtcaaggtggtgatggtcaccaggcacccg
gacatggatgaagctgttcacaagaaagcaccccagcaagctaagcggctcccgccccca
gccatctccttgcgttccaagtctatgacctctgagcttgaggagatggagtacgagcag
cagccgcccccgatgcccagcatggagaaaaagaggactgtgtatcagatggctctcaac
aaactggatgaaatcttggcggcagctcagcagactatcagtgcaagcgagagtcctggg
cctggtggcttggcgtccctgggtaaacaccgacccaaaggcttctttaccactgagtcg
agctttgatccccaccaccgctcccagccaagttacgaacgtccttcctacctgcctcct
ggacccgggctcatgctccgacaaaaatctattggggctgcagaggacgatagaccctac
ctagcacccccagccatgaagttcagccgcagtctgtctgtgcctggttcggaggacatt
cccccgccgcccaccacgtccccaccagagcccccctacagcacgcctccagccccatcc
tcctccggccgcctcactccctctccgcggggtgggcccttcaaccccagctcaggtggc
acccacccggcctcgtccccggcgtccttcgatgggcctgctccccctgacacccggata
gggagccgagataagagcctgtatcacagcgggcccctgcccccaccccaccaccacccg
ccccaccaccaccaccaccacgccccgcccccccagccccaccaccaccatgcccacccg
cctcacgccccggagatggagactggcggctcccccgacgaccccccaccccgcctggct
ctggggccccagcccagcctacgaggctggcggggcggcgggcccagcccgaccccgggt
gctctgtccccgtcgcaccacggcagcgggggcggcgcgggcggcccctcccaggctccg
gcgctgcgctacttccagctgcctccgcgggcggccagcgcggccatgtatgtgcccgcc
cgttccggccgcgggcgcaagggcccgctggtcaagcagaccaaagtcgtcgaaggcgag
ccccagaagggcggcggcctcccgcctgccccctcgcccacgtctccggcgtccccgcag
ccgccgccgccgccggccgcggccgccccgtcggaaaagaactccatccccatccccacc
atcatcatcaaggcgccatccaccagtagcagcggccgcagcagccaggggagcagcacc
gaggcggagcccccgagccagcccgaggccgcgggcggcggggtcggcggcggcggctct
tccgcgcccagccccgccccggccgtgtcgcccgtgccgccgtccccctcgcctgtgccc
acccccgcctcgcccagcggcccggccaccctggatttcaccagccagttcggagcggcc
ctggtgggggcggctcggagggaagggggctggcagaacgaagcccgccggcggtccacg
ctcttcctctccaccgacgcgggggacgaggacggcggcgacagctcgctgggcccaggg
gcgcccccgggcccccggctgcgccactccaagtccatcgacgaaggcatgttttcggcc
gagccctacctccggctggagtcggcgggcgccggcagcggctacgcgggctacgcggcc
ggcggccgagcctacgggggcagcagcgccttcaccagcttcctgccgccgcgacccctg
gtccacccgctgaccggcaagngcctggacccggcctccccactcgggctggccctggcc
gcccgggagcgggcgctgaaggagtcctcggagggcggtgggcccccccagccccctcca
aggcccccatcgccccgctacgaggccccgccgcccaccccgcaccaccactcgccccac
gcccaccacgagccagtgctgcgcctctggggagcctcgcccccggacccggcccgccgg
gagctggggtaccgggcagggctgggcagccaggagaagtcccttccggccagcccaccg
gcggcccgacgctccttgctgcaccgcctgcctcccacagctcccggggtcgggcccctc
ctgctgcagctggggcccgagccccccgccccgcaccccggggtaagcaagccctggaga
tctggcgcccccccggaggagcccgagcggctgcccctccacgtgcggttcctggagaac
tgccagccccgggccggcggggcgggtggaagggggcccccctcggaggacgggccgggg
gtcccgccgcccagcccgcgccgctctgtgccgccctcgccgacctccccgcggggcagt
gaagagaacgggctccccctgctggtcctgccgccgcccgccccctcagtagacgtggaa
gacggcgaattcctctttgtggaaccgctgcccccgcccctcgagttttccaacagcttc
gagaagccggagtcgcctctcacgccggggcctccccacccgctgccggacccacccacc
ccgaccaccccattgccctctgtgccgcccccggccgtggccgccgcccctcccaccctg
gactcgaccgcatccagcctgacttcctatgacagcgaggtggcaacgctgacccagggg
gcccccgcggctcctggggacccccctccgccaggccctcccgccccagccgctccggct
cccccagccccccagcctggcccagaccctcccccgggcacggattctggtattgaggag
gtggacagtcggagcagcagcgaccaccccctggagaccatcagcagcgcctccacgctg
agcagcctgtccgctgaaggcgggggcggcgcagggggtggaactggcggcgttggaggc
agtggtggcgccagcgtggccggtggaccagagctcctggatacctacgtggcctacttg
gatggccaggccttcgggggcagcggcactcctggccccccataccccccgcagctcatg
actccctctaagctccggggccgggcgctcggggccggcggaggcctgcggccgggcccc
ggtgggggactccgagaccctatcactcccaccagccccactgtctcggtgacgggggcg
ggaaccgatgggctgctggccctcagcggttgtccgggatcctcgacggcaggtgtggct
ggcggccccgtggctgtagagccggaaggtccgccagtgcccttgccgtcggcctcctcc
ctccctcgaaagctgctgccctgggaggagggcccgggcccgccgccgccccccctgccg
gggcccttagcccaacctcaggcctcagccttggccactgtaaaagccagcatcatcagt
gaactcagctccaagcttcagcagtttgggggctcctcggcagctggtggcgctctgccc
tgggcccggggaggcagcgggggaagcggggacagccaccacgggggagccagctacgtc
cccgagcggacttcctccctgcagcggcagagactctccgaagactcccagtcctcgctc
ctctccaaacccgtgagcagcctgtttcagaactggtccaaaccacctctgccgccactc
cccacgggaaccgcggtgtccccttcagccgctgcagccccgggggccacctccccatcg
gcttcctcctcctccacgtccgcccgccacctccagggcgtggagttcgagatgcgccca
cctttgctccgccgggcccccagcccctcattgctgcccgcctcggagcacaaggtcagc
cctgcgccccggccctcgtccctacccatcctgccttccggacccctctacccgggcctc
tttgacatccgaggctcccccaccggaggggcaggaggctcggccgacccctttgccccc
gtctttgtaccgccgcaccccgggatatccgggggtctcggcggggccttgtcaggggcc
tcccgctccctctcaccgacccgcctgctttccctgcccccggacaagccgttcggcgct
aaacctctgggcttctggaccaagttcgatgtggctgactggctagagtggctgggcttg
gccgaacaccgggcccggttcctggaccacgagatcgatggctcccaccttcccgccttg
accaaggaggactacgtcgatttgggggtgaccagggtgggacaccgcatgaacatcgac
cgggctctcaagtttttcctggagaggtga
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