Bos taurus (cow): 520256
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Entry
520256 CDS
T01008
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bta
Bos taurus (cow)
Pathway
bta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
520256 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
520256 (MTREX)
03041 Spliceosome [BR:
bta03041
]
520256 (MTREX)
03009 Ribosome biogenesis [BR:
bta03009
]
520256 (MTREX)
03016 Transfer RNA biogenesis [BR:
bta03016
]
520256 (MTREX)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
520256 (MTREX)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
520256 (MTREX)
Spliceosome [BR:
bta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
520256 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
520256 (MTREX)
Ribosome biogenesis [BR:
bta03009
]
Eukaryotic type
Pre-60S particles
Helicases
520256 (MTREX)
Transfer RNA biogenesis [BR:
bta03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
520256 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
520256
NCBI-ProteinID:
NP_001092482
BGD-bta:
BT28065
Ensembl:
ENSBTAG00000010518
VGNC:
34649
UniProt:
A5PJZ8
LinkDB
All DBs
Position
20:complement(23738859..23830099)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGRCFDGKLQSESTNVGKN
KRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQN
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctgttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaggagaaggggaagtggaaggggcctccagggtctgcagaa
aaggccggaagatgttttgatggtaaattacaatcagagtcaactaatgttggaaaaaac
aagagagatgcagacttcgagggtgctgatgaacctatttttggaaagaaacccagagtg
gaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaaggtacag
tcagttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatctgcacat
acatcagcaggaaaaactgtttgcgctgaatatgccattgcattggcgctaagagaaaaa
caacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacagca
tcctgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcctgggtcatttttgatgaaattcattacatgagagattcagagcgt
ggtgtcgtatgggaagaaactattattttgcttcctgataacgttcactatgtctttctt
tcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacataaacag
ccttgtcacgtaatttacacagattatcggcctactccattacagcactatatttttcca
gccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagatcagaat
gggcgaaaaggaggaacaaaaggtccatcaaacgtattcaagattgtgaagatgattatg
gaaagaaattttcaacctgttattattttcagttttagtaagaaagattgtgaagcttat
gcacttcaaatgaccaaattagatttcaacacagatgaggaaaagaagatggttgaagaa
gttttcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgaa
aatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaatgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatgtctggt
cgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagatgaaaag
atgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaatagtgct
ttccatttgacgtacaacatggttttgaacttactacgagtagaagaaattaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtggtcatctactacaagattagacagcagcttgccaaattgggtaaagaaattgaagaa
tacattcacaaaccaaaatattgcttaccctttctacagccaggtcgtttggtaaaggtg
aagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaatcaaat
gttaagcctaattctggtgaactggatccgttatatgtagtagaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaaacctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagcagtgtt
agactttacatccctaaagaccttcgaccactggacaatagacagagtgttctaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagaccctattgatgac
atgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggcctttgagcat
cgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaggttggga
tttgctacatcttctgatgtcatagagatgaaaggacgagtagcttgtgagataagcagt
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctatctgca
gagcaagcaacagcactactgagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagctcattt
aaacctcacttgatggatgtagtgtacacctgggcgaccggcgccacatttgcccacatc
tgcaaaatgacggatgtctttgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
tttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctactta
taa
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