Bos taurus (cow): 520990
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Entry
520990 CDS
T01008
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
bta
Bos taurus (cow)
Pathway
bta04140
Autophagy - animal
bta04142
Lysosome biogenesis
bta04145
Phagocytosis
bta04148
Efferocytosis
bta05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
520990 (VPS39)
04142 Lysosome biogenesis
520990 (VPS39)
04140 Autophagy - animal
520990 (VPS39)
04148 Efferocytosis
520990 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
520990 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bta04131
]
520990 (VPS39)
Membrane trafficking [BR:
bta04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
520990 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
DUF4145
Lgl_C
SAM_CEP-1_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
520990
NCBI-ProteinID:
NP_001193173
BGD-bta:
BT28173
Ensembl:
ENSBTAG00000032055
VGNC:
36822
LinkDB
All DBs
Position
10
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHAETGD
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGANKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRRKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgattctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacaaaacaaggtcatcttcttctctat
aggattcggaaagacgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtctcccagtttaagattctggtcagc
ttgttagaaaataatatttacgtccatgacctgttgacatttcaacaaatcactacggtt
tccaaggcaaagggagcatcattgttcacatgtgaccttcagcacgcagagactggggac
gaggtgttgcggatgtgtgttgccgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgagttgcagggggactttagtgtaccggatgtgcccaagtccatggca
tggtgcgaaaattctatctgtgtgggcttcaagagagactactacctaataagggtggat
ggaaagggggccaacaaagagctcttcccaacaggaaaacagctggaacccttagttgca
cctctggcggatggaaaagtagctgtgggtcaggatgatctcactgtggtgctcaatgag
gaggggatctgcacgcagaagtgtgccctgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggaaatccggacatttgag
ccgaggcttctggtccagagcattgaactgcaaagaccccgtttcattacttcgggcgga
tcaaacattatctatgtggccagtaatcactttgtctggagactcattccagtccccatg
gcgacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagctcgca
gaaatgaaagatgattccgacagtgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacagactac
aggaagcagctgcagtatcctaacccactgcctgtgctgtctggggctgagctggagaag
gctcacttagctctaattgactacctgacacagaaacgcagccaattggtaaagaagctg
aatgactctgatcaccagtctagcacctcccctctcatggaagggactcctaccatcaaa
tccaagaaaaagctgctgcagatcattgacaccaccctgctcaagtgctaccttcatacg
aacgtggccctggtggcccccttgctgcgtctggagaacaatcactgccacatcgaagag
agcgagcacgtgctgaagaaggctcacaagtacagcgagctgatcatcctgtacgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaaaaaagcaaattcc
cctctgaaaggccatgagcggacagtgcagtacctgcaacatctgggcacagaaaatctg
catttaattttttcctactcggtgtgggtgctgagagactttccagaggatggtctgaag
atatttactgaggacctcccagaggtggagtctctgccacgagaccgagtgctgggcttc
ttagtggagaattttaagggtctggctattccatatctggaacatgtcatccacgtttgg
gaggagactggctctcggttccacaactgcctgatccagttgtactgcgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccctgctggt
gaggaggaaggagaactgggagaataccgacggaagctccttatgttcctggaaatttcc
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttggaagaa
cgtgccctcctgctgggacgcatggggaaacatgaacaagctctcttcatttacgtccac
gtcctgaaagacacgaggatggctgaagagtactgccacaagcattatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcaccccccagcgtg
cactgcctggggccgatcaagctggaactgctggagccacaagccaacctccaggccgcc
ctgcaggtcctagagctgcaccacagcaagctggacaccaccaaggccatcaacctgttg
cccgcgaacactcagattaacgacatacgcatctttctggaaaaggtcttagaagagaat
gcacagaagaaacggttcaaccaagtgctcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcgcatcctgcaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagcgcatttgcaagataccccaatggggtg
gtcgtgcattacttctgctccaaagaggtcaacccggctgacacctga
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