Bos taurus (cow): 528991
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Entry
528991 CDS
T01008
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bta
Bos taurus (cow)
Pathway
bta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
528991 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
528991 (XAB2)
03041 Spliceosome [BR:
bta03041
]
528991 (XAB2)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
528991 (XAB2)
Spliceosome [BR:
bta03041
]
Complex B
Other components
Prp19-related factors
528991 (XAB2)
Complex C
528991 (XAB2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
PRP6_TPR
TPR_12
TPR_2
Suf
TPR_8
TPR_19
ARM_TT21
CFAP70_TPR_C
TPR_15
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
528991
NCBI-ProteinID:
NP_001069387
BGD-bta:
BT19745
Ensembl:
ENSBTAG00000011360
VGNC:
36981
UniProt:
Q0V8D9
LinkDB
All DBs
Position
7
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYICSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctttcgaggcccgagcgaccggaccttgtgttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggca
caggtgaagcatcgctgcgtgactgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgaaagcgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggatgaggcagcgcagcgcctg
gccaccgtggtgaacgacgaacgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaatgtg
gacgccatcatccgtgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggctgactactacatctgtagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
caattcgaggagagtatgatcgcggcgaagatggagaccgcctcggagctggggcgggag
gaggaggatgacgtagacctggagctacgcctggcccgcttcgagcagctcatcagccgg
cggcctctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgccctcgggagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaagccaccggcaagccccacacgctgtgggtcgcg
tttgccaagttttacgaggacaacgggcagctggacgatgcccgcgtcatcttggagaaa
gccaccaaggtgagtttcaagcaggtggacgacctggccagtgtgtggtgcgagtgtgga
gagctggagctccggcatgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgccgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtacgaccgcatcctggacctgcgcatcgccacgccgcagatc
gtcattaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacctac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgagcacgtgacctcttt
gagcaggcgctggatggctgccctcccaaatatgccaagacgctgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcggcacgccatggcagtgtatgagcgtgccacc
agggctgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagcatctatcagaaggccattgaggtgctgtct
gacgagcacgcccgggagatgtgcctgcggttcgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
ggggccttctggcaaacgtggaaggactttgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcactgtgtccgacctggcc
cccgggcagagcggtatggatgacatgaagctgctggagcagcgtgccgagcagttggcg
gccgaggcggagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggctgagctggcccagcaggccaacccagaggagattgag
ctgggcgaggacgaggatgaggatgaaatggacctggagcccaacgaggtgcgcctggaa
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagactga
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