Bos taurus (cow): 532933
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Entry
532933 CDS
T01008
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bta
Bos taurus (cow)
Pathway
bta03013
Nucleocytoplasmic transport
bta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
532933 (UPF1)
03015 mRNA surveillance pathway
532933 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
532933 (UPF1)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
532933 (UPF1)
5.6.2.5 RNA 5'-3' helicase
532933 (UPF1)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
532933 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
532933 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
532933
NCBI-ProteinID:
XP_002688572
Ensembl:
ENSBTAG00000020922
VGNC:
36680
LinkDB
All DBs
Position
7:complement(4335173..4368755)
Genome browser
AA seq
1116 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP
LNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQT
HDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQK
NRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagcgtggccaagaccagccagttgttggccgaa
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctgcctgtacatgcc
tgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctaggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cctggagtggacgaggagccgcagcacgtcctcctgcgctacgaggacgcctaccagtac
cagaacatatttgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctgacatgcggctcatgcaaggggatgagata
tgcctgcggtacaaaggggacctggcgcccctctggaaagggatcggccacgtcatcaag
gtccctgataattatggcgatgagattgctattgagcttcggagcagcgtgggcgcccct
gtggaggtgactcataacttccaggtggatttcgtgtggaagtcaacctcattcgacaga
atgcagagcgcactgaaaacctttgccgtggatgagacctccgtgtcgggctacatctac
cacaaactgcttggccatgaggtggaggatgtgatcatcaagtgccagctgcccaagcgc
ttcacggcacaggggctccccgacctcaaccactctcaggtttacgccgtgaagactgtg
ctgcagagaccactgagtctgatccagggcccaccgggcacaggaaagaccgtgacctca
gccaccatcgtctaccacctggctcggcaaggcaacgggcctgtgctggtctgtgctcca
agcaacatagccgtggatcagctgactgagaagatccaccagaccgggctgaaagtcgtg
cggctctgcgccaagagccgcgaggccatagactccccggtgtccttcttggccctgcac
aaccagatcaggaacatggacagcatgccagagctccaaaagctgcagcagctgaaggat
gagactggggagctgtcgtcggcggacgagaagcgttacagagccctgaagcgcactgcc
gagagggagctgctcatgaacgcagatgtcatctgctgcacgtgtgtgggcgcaggagac
ccgaggctcgccaagatgcagttccgctccattttaatcgacgaaagcacgcaggccacc
gagccagagtgcatggtccctgtggtccttggagccaagcagctgatcctcgtgggtgac
cactgccagctgggccctgtggtgatgtgcaagaaggcggccaaggccgggctgtcgcag
tcgctctttgaacgcctggtggtgctgggcatccgccccatccgcctccaggtccagtac
cggatgcaccccgcgctcagcgccttcccgtccaacatcttctacgagggctctctccag
aatggcgttaccgcagcggatcgtgtaaagaaggggtttgactttcagtggccccaaccg
gataaaccaatgttcttctatgtgacccagggccaagaggagattgccagctcaggcacc
tcctacctgaacaggacggaggctgcaaacgtggagaagatcaccacgaagctgttgaag
gcgggcgccaagccggaccagatcggcatcatcacgccctacgagggccagcgctcctac
ctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtggag
attgccagcgtggacgcgttccaggggcgtgagaaggactttatcatcctctcctgtgtg
cgggccaatgagcaccaaggcattggatttttgaatgaccccaggcgactcaacgtggcc
ttgaccagagcacgatacggggtcattatcgtgggcaacccgaaggccctgtccaagcag
ccgttatggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggaccc
ctgaacaacctgcgggagagcctcatgcagttcagcaagcccaggaagctggtcaacacc
atcaacccgggagcccgcttcatgacgacagccatgtatgatgcccgggaggccatcatc
ccagggtcggtctatgaccggagcagccagggccggccctcgaacatgtacttccagacc
cacgaccagattggcatgatcagcgccggccccagccacgtggctgccatgaacatcccc
attcccttcaacctggtcatgccgcccatgccgccaccggggtattttggacaagctaat
gggccagccgcaggccgaggcaccccgaaaggcaagactggtcgtggggggcgccagaag
aaccgctttgggcttcctgggcccagtcagacgaatctccccaacagccaggccagccag
gatgtggcgtcccagcccttctcccagggcgccctgacccaaggctacatctccatgagc
cagccctcccagatgagccagcccggcctctcccagcctgagctgtcccaggacagctac
cttggagatgagtttaagtcacagatcgacgtggcgctgtcgcaagactccacataccag
ggcgagcgggcgtaccagcacggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
