KEGG   Bos taurus (cow): 534645
Entry
534645            CDS       T01008                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
bta  Bos taurus (cow)
Pathway
bta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    534645 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bta03041]
    534645 (SNRNP40)
Spliceosome [BR:bta03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    534645 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    534645 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 534645
NCBI-ProteinID: NP_001039847
BGD-bta: BT18447
Ensembl: ENSBTAG00000016817
VGNC: 35071
UniProt: Q2HJH6
LinkDB
Position
2:122347180..122372984
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgtaagggcccagagttgccactggtcccagtcaagcggcag
cgacatgaactactgttgggagcggcagggtcgggccctggagccgggcagcagcaggcg
gcgccgggagctttgctgcaagcgggtcctccaagatgttcctcccttcaagccccaatc
atgcttctctcaggacatgaaggggaagtgtattgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatattgttgtggaatgtctatggagactgt
gataactacgctacattgaagggacacagtggagcagtgatggagcttcattataacaca
gacggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggatagtgaa
acaggcgagagggttaaaagactgaaggggcatacttcctttgtgaactcctgttaccca
gccaggaggggcccccagcttgtttgcactggcagtgacgatggtacagtcaagctttgg
gatatccgcaagaaagcagccatccagacatttcagaacacctaccaagttttagctgtg
actttcaatgatacaagtgatcagattatttctggtggaatagacaatgatatcaaggtc
tgggacctgcgccaaaataagctgacctacacaatgagaggtcatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttacctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagagcggtgtgtgaggatatttcaagga
aatgtgcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagctgacaggttcgtctacgtctgggataccacaagcaggaggatt
ttgtataagctaccgggccatgctggctccatcaatgaagtggctttccaccccgatgaa
cccatcattctctcagcatccagtgacaagagactatacatgggggagattcagtga

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