Bos taurus (cow): 538483
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Entry
538483 CDS
T01008
Symbol
CIC
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
bta
Bos taurus (cow)
Pathway
bta05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
538483 (CIC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bta03000
]
538483 (CIC)
Transcription factors [BR:
bta03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
538483 (CIC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
538483
NCBI-ProteinID:
XP_005219445
Ensembl:
ENSBTAG00000019785
VGNC:
27363
UniProt:
G3MX46
LinkDB
All DBs
Position
18:complement(50982355..51009519)
Genome browser
AA seq
2509 aa
AA seq
DB search
MKPMKKACTSLPGSGSSGKSPPATRAKALRRRGAGEGDKPEEEDDEAQQQQPGPEEAEEG
EEEEAEQGPRAEGLPPELQADDPAPGPAEEPKVEGEAGRWEPSLSRKTATFKSRAPKKKY
VEEHGAGSGSSAAVGAPEEQARTPEEAGALGVPPRPPTSTRSSSTDTASEHSADLEDEPA
EACGLGPWTPGSTSGGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFHGDRAL
TFYEGVPGGGVDVVLDATPPPGALAVGTAVCTCVEPGMAAYREGVVVEVATKPAAYKVRF
GPGPSSQLGPAALPQPPQPPHREPEDAVWVARSSLRLLRPPWEPEALPRKPPAGPEEEQA
EPGATLPPCPAALDPKQPEDAEVSKISFGGNLGACEEGEEKHPPALGTPALLPLPPQLLS
PPPKSPAFAGPGRPGEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQQKYKK
GDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADSGPGGA
GRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECEAAVML
VSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAVRSRHL
SASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTELLPHPG
ALGAPGAAGGGAAPDFPKNDSLDAGVDSVSHTPAPSAPAGFRAVSPAMPFSRSRQPSPLL
LLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVGTGSEARAGGPGRGC
RETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTFGLASSPFQPVAFHPSPA
ALLPVLVPSSYTSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQ
PSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGNADPGRPPGATCPESPGPGPPHTL
GVVEPGKGPPPTTEDEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSL
SALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKIL
GEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKE
PRERSMSETGTAAAPGVSSELLSVTAQTLLSSDTKAPGSSSCGAERLHAVGGPGSARPRA
FSHSGVHSLDGGEVDSQALQELTQMVSGPASYAGPKPSTQYGTPGHFAAPGEGGTLAASG
RPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKERVTDS
ESGDSSGEDPEGSKGFGRKVFSPVIRSSFTHCRPSLDPEPPGPPDPPAGFGKGYGPTSSA
SSPAASSSSATTSFPLGSGTFKAQESGQGSTTGPLRPPPPGTGGPATPSKATRFLPTDPA
TFRRKRPESVGGLEPPGPSVIAAPPSGGGGVLQTLVLPSNKEEREGSGARVPSAPAPSLA
YGAPATPLSRPAATMVTNVVRPVSSTPVPIASKPFPAPSRAEASPGDTAGARTEAATGSR
ALGGSPLGVSLVYSDKKSGAATSTAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPP
AVQFIAQGGPGSGAAAGSGASAGSGPNGPMPLGILQPGPLGKAGGITQVQYILPTLPQQL
QVAPAPGTKAAAPGGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKA
QSVSPVQAPPPGGSAQLLPGKVLVPLATPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPP
SKIIQLTPVPVSTPSGLVPPLSPAPLPGPASQPQKVLLPSSTRITYVQSAGGHALPLGTS
PASSQPGTVTSYGPTSSVTLGFTSLGPSGPAFVQPLLSGQAPLLAPGQVGVSPVPSPQLP
PTCAAASGPVITAFYPGSPIPTSSAPLAQPSQAPPGLVYTVATSTTPPAAPILPKGPPAP
TAATPAPASPFPSATGSMTYSLVAPKAQRPTPKAPQKVKAAIASIPVGSFEAGAPGRPGP
APRQPLEPGPAREPPASESELEGRPATPAPPLPHETWTPTARSSPPLPPPAEEQASTKGP
ETMATKFPSSSSDWRVPGLGLESRGEPPTPPSPALAPAPAPGSSSGSSEGSSGRAAGDAP
ERKEAAGAGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSL
ATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTF
DRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYAD
IFPSKVCLQLKIREVRQKIMQAATPSEQPPGAEAPLPGPPPTGTAAAPVPTPSPAGGPDP
TSPGSDSGTAPAAPPLPPPPEPGPGQPGWEGPPQPSPPASGSSTAATGR
NT seq
7530 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccatgaaaaaggcgtgcaccagccttccaggttctggcagcagtggcaagtcc
ccaccagccaccagggccaaggccctgaggcggcgaggggctggggagggggacaagcca
gaggaggaagacgacgaggcgcagcagcaacagccggggccagaagaggctgaggagggt
gaggaggaggaagctgagcagggcccgcgggccgaggggctgcccccggagctgcaagct
gatgacccggccccaggcccagctgaagaacccaaggtggagggggaggcgggccgctgg
gagccatcactcagccgaaagacggccacgttcaagtcacgagcgcccaagaagaagtat
gtggaggagcacggcgccggcagtggcagcagtgcagcggtgggtgcccctgaagagcag
gcacggacccccgaggaagccggcgccctgggggtgcctccacggccacccacctccacg
cgctcctcctccaccgacacagccagcgagcactcagccgacctggaggatgagccggct
gaagcctgtggtctgggcccctggacccctggcagcaccagcgggggctacgacctgcgg
cagctgcggtcccagcgagtcctggctcggcgcggggatggcctcttcctgccggctgtg
gtgcgccaggtgcgccgaagccaggacctgggtgtgcagttccacggggaccgggccctg
actttctatgagggggtgcctggcgggggtgtggatgtggttctggatgccacgccccca
ccgggggcgctggcggtgggcacagcagtctgtacctgcgtggagcccggcatggcggcc
taccgggagggtgtggtggtggaggtggccaccaagcccgccgcctacaaggtccgcttc
ggccctggccccagctcccagctgggcccagccgccctgccgcagccacctcagccacca
caccgggagcccgaggatgcggtatgggtggcccgctccagcctccgcttgctgcggccc
ccctgggagcccgaagccctgccaaggaagcccccggcaggccctgaggaggagcaggcc
gagcccggggccaccctgcccccctgccctgctgccctggaccccaagcagcctgaggat
gctgaggtctccaagatcagcttcggtggcaaccttggggcttgtgaggagggtgaggag
aagcacccgcccgccctgggcaccccggctctgctcccactgccgccccagctcctgtca
ccaccacccaagtcccctgccttcgcaggcccaggccgcccgggtgagcagccctccccg
tgccaggaggggagccagggtggcagccggagcagcagcgtggcctcactggagaaaggg
gctgcgccggccgcccgggcccgcacacccctgacagcagcccagcagaagtacaagaag
ggcgacgtggtctgcacgcccaatggaatccgaaagaagttcaacggcaagcagtggaga
cggctgtgctcgagagatggctgcatgaaggagtcacagcggcggggctactgctcccgt
cacctgtccatgcgaaccaaggagatggagggcctggcagacagtggcccgggtggggcc
gggcggccggcgggcgtggcggcccgtgagggcagcaccgagttcgactggggggatgag
acgtcgcgggacagtgaggccagcagcgtggcagcccgcggagactcccgtccacgcctg
gtggcccccgccgacctgtctcgttttgagtttgacgagtgcgaagcagcggtgatgctg
gtgtccctgggcagttctcgctcgggcacaccctccttctcccccgtgtctacgcagtca
cccttctcgccagccccgtcgccctcgccctcgccactcttcggcttccgccctgccaac
ttcagccccatcaacgcctcgcccgtcatccagcgtaccgctgtccgcagccgccacttg
agcgccagcacccctaaggcgggcgtgctgacgccaccagacctgggcccccacccgccg
ccacctgccccccgagagcgccattcctctggcatcctccccaccttccagaccaacctg
acctttactgtgcccatcagccctgggcgacggaagacagagctgctgccccacccaggg
gcgttgggggctcccggcgcagcgggtggaggagccgccccagacttccccaagaatgac
agcttagacgctggcgtggactcggtgtcccacacacctgcaccctccgcgccagctggc
ttccgagccgtgtcgcccgccatgcccttctcccgctcccgccagccctcaccgttgctg
ctgttgcccccacctgctggcctgacctcggaccctgggccctccgtgcgccgggtgcct
gccgtgcagcgggactcacctgtcatcgtccgtaacccggacgtgccgctgccctccaag
ttccccggggaggtgggcactggcagtgaggcccgggccgggggacccgggcggggctgc
cgagagaccccagtgcccccaggggtggccagtgggaagcctggtctgcccccacctctg
ccggcccccgtacccatcactgtgcctccagctgcgccgactgccgtggcccagccaatg
cccacctttggcctggcttcctcacccttccagccggtggccttccacccctcacctgct
gctctgttgcctgtcctggtgcccagcagctataccagccatcctgcccccaaaaaggaa
gtcatcatgggccggcctgggacagtgtggacaaatgtggaacctcgctctgtggccgtg
ttcccctggcactccttagtccccttcctggcccccagccagcctgacccctctgtacag
ccaagtgaggcccagcaacctgccagccaccccgtggcctccaaccagagcaaagaacct
gctgagtcggcggccgttgctcacgagcagccaccgggcgggacagggaatgctgacccg
gggcggccccctggagccacatgccctgagagcccagggcctggacccccccacactttg
ggggtggtggaacctgggaagggcccccctcccaccacggaggatgaggcccctggaccg
ccaggagagccgcggctggacagcgagacagagagtgaccacgatgatgccttcctctcc
atcatgtctcctgagatccagttgcccctgccgcccgggaaacgccggacccagtccctc
agcgccctgcccaaggaacgggactcctcttcagagaaggacggacgcagccccaacaag
cgggagaaggaccatatccggcggcccatgaatgccttcatgatcttcagcaagcggcac
cgggccctggtccaccagcgccaccccaaccaggacaaccggactgtcagtaagatcctg
ggcgagtggtggtacgccctggggcccaaggagaagcagaagtaccatgacctggccttc
caggtgaaagaggcccactttaaggcccacccagattggaagtggtgcaacaaggaccgg
aagaagtccagctcagaggctaagcccacgagcctggggctggcaggagggcacaaggag
ccgagggagcggagcatgtcagagacaggcactgccgctgcccccggagtgtcttcagag
ctcctgtctgtcacggcccagacactcttgagctcggacaccaaggctccggggagcagc
tcctgtggggcagagcgtctgcacgctgtcgggggacctggctcagcccggccccgcgcc
ttctcccacagcggggtccacagcctggatggtggggaggtagacagccaggcgttgcag
gaactgactcagatggtgtctggccctgcgtcctacgctggcccaaagccctccacccag
tacgggactccaggccactttgcggcgcccggggagggaggcaccctggcagccagtgga
cggcccccactgctccccacccgggcctcccgttcccagcgtgcagccagtgaggacatg
accagtgatgaggaacgcatggtcatctgtgaggaggagggggatgacgatgtcattgct
gatgacggcttcggcaccactgacattgacctcaagtgcaaggagcgggtgactgacagc
gagagtggagacagctctggggaggacccggagggcagcaagggctttggccggaaggtg
ttctcgcctgtgatccgttcctcctttactcactgccgtccgtcgctggaccctgagcct
ccagggcccccagatccacctgcaggcttcggcaaaggctatgggcccacctcctccgca
tcctcacccgctgcctcctcctcctcagccaccacctccttcccactgggctcagggacc
ttcaaggcccaggagtcaggtcagggcagcaccacaggccccctccgtcccccaccccct
ggaactgggggcccagcaacaccttctaaggccacccggtttctccccacggatcctgcc
accttccgtcgcaagagacctgaaagcgtgggcggcctggagccaccaggcccctcagtc
atcgcggcgcctcccagtgggggaggaggcgtcctgcagacactggtcctgccctcaaac
aaggaggaacgggagggcagcggagctcgcgtgccctcagccccagcaccctcgctggcc
tacggggccccagcaacccccctgtcccgcccggctgccaccatggtcaccaacgtggtg
cggcccgtcagcagcactcctgtgcccatcgcctccaagcctttccccgctccgagccgg
gccgaagcgtctcctggtgacacagctggtgccaggactgaggcggccactgggtcccga
gcactggggggctccccgctgggcgtcagcttagtgtactcggacaagaagtcaggagct
gccacctccacggccccacacctggtggctgggcccctcctgggcactgtggggaaggcg
ccggccactgtcaccaacttgctggtgggcaccccaggctacggggccccagcgccacct
gctgtccagttcattgcccaggggggccctggcagtggggcggctgcaggctcgggggcc
agtgctgggagtggccccaatgggccaatgcccctgggcatcctgcagccgggtcccctg
ggcaaggctgggggcatcacccaggtgcagtacattctgcccacgctgccccagcaactg
caagtggcaccggcccctgggaccaaggcagcggcgcccggcggccctgcccccaccacc
agcatccgtttcaccctcccgccgggcacctccaccaacggcaaagtcctggctgccacc
gcacccactcctggcatccccatcctgcagtccgtaccctccgccccgccccccaaagcc
cagtcagtgtctcccgtgcaggccccgcccccaggtggctcagcccagctgctgcccggg
aaggtactcgtgcccttggccacccccagcatgtcagtgcggggaggcggggctggccag
ccactgcccctggtgagcccgcccttctcagtacctgtgcagaacggtgctcagccaccc
agcaagatcatccagctgactccagtgcctgtgagcacacccagcggcctggtgccgccc
ctcagcccggccccactccccggccccgcctcgcagcctcagaaagtcctgctgccctcc
tccaccagaatcacctatgtgcagtcagcaggtgggcatgcactgcccctgggcaccagt
cctgcgtccagtcagcctggaacagtcacctcgtacggacccacgagctcggtcaccctt
ggcttcacctcactggggcccagtggccccgccttcgtgcagcccctgctttcaggccaa
gccccactgctggctcctggccaggtgggcgtgtcgcctgtgcccagcccccagctacct
cccacctgcgcagccgccagtggtcccgtcatcacagcattttaccctggcagccccata
cccacctcttcagcacccctggcccagccatcccaggctcccccaggcctggtctacact
gtggccaccagcaccaccccacctgctgcccccatcctgcccaagggcccaccggcaccc
actgctgccaccccggcccctgccagccctttccctagtgccacaggctccatgacctac
agtttagtggcccccaaggcccagcggcccacccctaaggccccccagaaagtaaaggcg
gccatcgccagcattcctgtgggctccttcgaggctggtgctcctgggcggccaggccct
gcaccccggcagcccttggagcctggcccagcccgtgagcccccagcgtccgagtcagag
cttgaggggcggccagcaacaccagcccctccactgccccatgagacctggactcccaca
gcccggagcagtcccccgctgcccccacctgccgaggagcaggccagcaccaagggccct
gagaccatggccaccaaattccccagctcgtcttcagactggcgtgtccccgggctgggc
ttggagagccggggggagcctcccacccctcccagcccggccctggctccagccccagct
cctggcagcagcagcggcagcagcgagggcagcagtgggagggcggccggcgacgccccc
gagcgcaaggaggcggctggtgctggcaagaaggtgaaggtgcggcccccgcccctgaag
aagacctttgactctgtggacaacagggtcctgtcagaggtggacttcgaagagcgcttt
gccgagctgcctgagttccggcctgaggaggtgctgccctcgcccaccttgcagtctttg
gccacctcaccccgggccatcctgggctcctaccgcaagaagaggaagaattccactgac
ctggactcggcccccgaggaccccacctcgcccaagcgcaagatgaggcggcgctccagc
tgtagctcggagcctaacacccccaagagtgccaagtgcgagggcgacatcttcaccttt
gaccgcacaggcacagaagcggaggacgtgcttggggagctggagtacgagaaagtgccc
tattcgtcgctgcggcgcaccctggaccagcgccgggccctggtcatgcagctcttccag
gaccacggcttcttcccatcagcccaggccacggcagccttccaggcccgctatgcggac
atcttcccctccaaagtctgtctgcagctgaagatccgtgaggtgcgccagaagatcatg
caggcggccactccctcagaacagcccccgggagccgaggcccccctccctggaccgccc
cccactggcactgctgctgcccctgtccccactcccagccccgcagggggccccgacccc
acctcacctggctcggactctggcacagccccggctgccccgccactgcctccaccccca
gagccggggcctggacagcctggttgggaggggcccccccaaccctcaccacccgcctct
ggttcctccacagctgccacaggcaggtga
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integrated database retrieval system
