KEGG   Bos taurus (cow): 539357
Entry
539357            CDS       T01008                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
bta  Bos taurus (cow)
Pathway
bta03250  Viral life cycle - HIV-1
bta04144  Endocytosis
bta04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    539357 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    539357 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    539357 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bta04131]
    539357 (VPS4B)
   03400 DNA repair and recombination proteins [BR:bta03400]
    539357 (VPS4B)
Membrane trafficking [BR:bta04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    539357 (VPS4B)
DNA repair and recombination proteins [BR:bta03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    539357 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_5 RuvB_N AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 AAA_17 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII NACHT Parvo_NS1 AAA_28 bpMoxR TPR_1 KAP_NTPase DUF5906 MCM TPR_10
Other DBs
NCBI-GeneID: 539357
NCBI-ProteinID: NP_001069624
Ensembl: ENSBTAG00000010492
VGNC: 36825
UniProt: Q0VD48
LinkDB
Position
24:complement(61655099..61686320)
AA seq 444 aa
MASTPTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKREKKPQKPVKEGQPAPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLSS
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgtccacccctaccaacctgcagaaagccatagatcttgctagcaaagcagcccag
gaagataaagccggaaactacgaggaggcccttcaactctaccaacatgctgtgcagtat
tttctccacgtggttaaatatgaagcacaaggtgataaagccaagcagagtatcagggcg
aagtgtacggagtatcttgatagagcggagaagctgaaggagtacctgaagaagagagag
aagaagccccagaagccggtgaaggaggggcagccggcccccgctgacgagaaggggaat
gacagtgatggggaaggagaatctgatgatcccgaaaaaaagaaactgcagaatcaactt
caaggtgccattgttatagagcgacccaatgtgaagtggagcgatgttgctggtctggaa
ggagctaaagaagctctgaaagaggccgtgatattgcctatcaaatttcctcatctcttt
acaggcaagagaacgccttggaggggaatcctgttatttgggccacctggaacaggaaag
tcctatttagccaaagctgtagccacagaagcaaataactcaacatttttctcaatatct
tcctctgaccttgtttctaagtggctaggtgaaagtgaaaagctagttaagaacttattc
cagcttgccagagagaataaaccttcgattatcttcattgatgaaatcgattctctgtgt
ggttcaagaagtgaaaatgaaagtgaagctgcaagaagaattaagacagaattcctagtt
cagatgcaaggggttggcgtggacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattaggcgaaggtttgagaaacgaatttacattcctttg
cctgaggcgcatgcccgagcagcgatgtttaaactgcacttgggcaccactcagaacagt
ctgacggaagcagacttccgggacctcggaaagaagactgagggctactcaggggcggac
ataagcatcattgtacgggacgcacttatgcagccagtgaggaaagtgcagtcagctacc
cattttaaaaaggttcgcggaccttcacgggctgatcctaacaacatagtagatgacctg
ctcacgccctgctctccaggcgaccctggtgccattgagatgacatggatggatgtccct
ggggataaacttttggagccagttgtttgcatgtcggacatgttacggtcactgtctagc
acaaagcccacggtcaatgaacacgacctgttaaaactaaagaagtttacagaagatttt
ggccaagaaggctag

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