Bos taurus (cow): 540191
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Entry
540191 CDS
T01008
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bta
Bos taurus (cow)
Pathway
bta03013
Nucleocytoplasmic transport
bta03015
mRNA surveillance pathway
bta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
540191 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
540191 (DDX39B)
03015 mRNA surveillance pathway
540191 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
540191 (DDX39B)
03041 Spliceosome [BR:
bta03041
]
540191 (DDX39B)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
540191 (DDX39B)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
540191 (DDX39B)
Spliceosome [BR:
bta03041
]
Complex C
Other components
EJC/TREX
540191 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
540191 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
540191
NCBI-ProteinID:
NP_001028801
Ensembl:
ENSBTAG00000014490
VGNC:
27965
UniProt:
Q3T147
LinkDB
All DBs
Position
23:27748193..27758989
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagacg
gcagctggaggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcttgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgtatccctcaggccatc
ctgggaatggacgtcctatgccaggccaagtcaggcatgggaaagacagcggtgtttgtg
ctggctacactgcaacaattggagccagttactggacaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctccaaatacatg
cccagcgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacggatt
ctcgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattcagatacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatataagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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integrated database retrieval system
