Bos taurus (cow): 541016
Help
Entry
541016 CDS
T01008
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
bta
Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bta03021
]
541016 (SCAF4)
03041 Spliceosome [BR:
bta03041
]
541016 (SCAF4)
Transcription machinery [BR:
bta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
541016 (SCAF4)
Spliceosome [BR:
bta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
541016 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
541016
NCBI-ProteinID:
XP_002707732
Ensembl:
ENSBTAG00000018855
VGNC:
52822
UniProt:
A0A3Q1MTL1
LinkDB
All DBs
Position
1:3760537..3822519
Genome browser
AA seq
1143 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAVAASATTTPAPAAVVPTTP
ATAAAPSVAAPTASPPQAPFGFPGDGMPQPTYAQHQNMDQFPPRMMAVQQDPVHHQVPLP
PNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCI
QEPKRHISDHRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQER
RDREKERERRQKGLPQIKAETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIP
PRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTY
IPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPTPKP
LPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPP
PPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSI
GNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIG
LQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPP
PHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQPPPQQQQQQQQQPPAQPPPQ
QPPPAQQPPPAQQQPQPFRNDSRQQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRE
NSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVA
DRAGSNKTVEPPISQAGNVDTVSELPKGEPGPAVAKPSEELPAEATSSVNPEKDPGSAAE
APR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaagagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattctcatcacgaaagctgctattaaagctataaagctttat
aagcatgtggttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccaggattatatgtaatcgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatctgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtattgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggacatggcagcaggaaccagtaat
gctgctccagtaacagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaacctccacaagccactacaaactctgtaccaactgtaccgcagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccattgacaat
gccgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgagccagaagcagtggaagaatccaagaaagaagat
gctgttgccgcctcggccaccacaacacctgctcctgccgctgttgtgcccactacgccg
gccaccgccgccgcaccttctgtggctgcgcccactgcctctcctccacaggcacccttt
gggtttcctggagatggcatgccgcaaccaacatatgcccaacatcagaacatggatcag
tttccgcctcgaatgatggcagtgcagcaggatccagtgcaccatcaggttccacttcct
cctaatggacagatgccaggctttggccttcttcctacacctccgtttcctcccatggct
cagcccgtgattcctccaactccacctgtgcagcagcccttccaaacttcctttcaggca
caaaatgagccacttacacagaaggcacatcaggaaatggaagtagaacaaccttgtatt
caagagcctaagcggcacatatctgatcacagaaagtcaagatctagatcagcatccagg
tcaccgaaaaggagacgatctcgatctggttctagatctcgaaggtctcggcatcgacgt
tctcgatctaggtccagagatagacgccgacattctcctcggtctcgatcccaagaaaga
cgagatcgagaaaaggaaagagaacgccgacagaaaggccttcctcagatcaaagcagaa
accgcaagtgtttgtagtactacactctgggtgggacagctggacaaaaggactactcag
caggatgttgccagtcttttagaagagtttggtccaattgaatcaattaatatgattcct
cccagaggttgtgcctatattgttatggttcataggcaagatgcctatcgtgccctgcaa
aaactgagccgagggaactacaaagtgaaccagaaatccataaagattgcctgggcccta
aacaaaggaataaaagcagattataagcagtattgggatgtagaacttggtgttacttat
attccatgggacaaagtcaagcctgaagaactggagagtttctgtgaaggaggaatgttg
gacagtgatacacttaatccagattggaagggaattcccaagaagcatgaaaacgaagtt
gctcaaaatggaggagctgaaacctcacacacagagccagtgtcacccacacctaagcct
ctgcctgtgcctgtgcctcctattcctgttcccgcaccgataacagtaccgcctccacag
gtcccaccacatcagccaggacctcctgtagttggtgctctccagccacctgctttcacg
cctcctttgggaattccacctccaggctttgggcctggtgttcctcctcctccacctccg
ccaccgtttttgcgcccaggattcaacccaatgcatctgccaccaggttttcttccccct
ggacccccacctcctataactccaccagtatccattcctcctcctcacactccaccaata
agcatcccaaactctactatcgctggtataaatgaagacactacaaaagacttatctatt
ggaaatcccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagt
gtgaaaatgtatggctctgctgtgccacctgctgcacccacgaatctgcctacccctcct
gtaacccagcctgtttcacttcttggtacccaaggagttgcaccaggtcccgtcattggg
ctccaggccccgtccactggtctcctcggtgcccgacctggcctgatcccactccagcgc
ccgccaggaatgcctccacctcacttacagcggtttcccttgatgccacctcggcccatg
cctccacacatgatgcaccgaggcccaccaccaggcccggggggcttcggaatgcctccg
cctcatggaatgaaaggcccattcccaccccacggccccttcgtcaggcctggcgggatg
ccagggctcgggggcccggggccgggcccggggggtcctgaggaccgagacggaaggcag
ccgccgccacagcagcaacagcagcaacagcagcagccacctgcacagccgccaccgcag
cagccgccgccagcccagcagccgccgccggctcagcagcagccacagccgttcagaaat
gacagcaggcagcagcagttcaattcaggtagagaccaagaaaggtttggaagaagatcc
tttggaaatagggtggagaatgaccgggaacggtacgggaaccgtaacgatgatcgagag
aatagtaaccgtgagaggagagagtggggaaggaggagccccgaccgggacaggcacaga
gacttggaagacaggaatagacgttctagtgggcatcgagacagagagagagattctaga
gatagagagtctcgtagagagaaggaagaaaaccgaggcaaagagaagcccgaggtggca
gacagggcaggcagtaacaagaccgtggaacctcccattagccaagcgggaaacgtagac
actgtttcagaacttcctaagggggagcctgggcctgcagtcgcaaagccttctgaagag
ttacctgctgaggctacctcatccgtcaaccccgagaaggaccccggctcagcagcagag
gctcctcgttaa
DBGET
integrated database retrieval system
