Bos taurus (cow): 541024
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Entry
541024 CDS
T01008
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bta
Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bta03041
]
541024 (YTHDC2)
Enzymes [BR:
bta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
541024 (YTHDC2)
Spliceosome [BR:
bta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
541024 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
541024
NCBI-ProteinID:
NP_001179740
BGD-bta:
BT16622
Ensembl:
ENSBTAG00000014099
VGNC:
37040
UniProt:
F1MNU7
LinkDB
All DBs
Position
10:2413565..2487286
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCCPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENS
FKPESQRQRAIPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTSGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHSCEAGAILIFLPGYDEIVGLRDRILFDDKRFAENAHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCAIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPHLVHVDRENVVLAGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQTAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
ADGIPNDSSDSEMEDRTTANLATLKLDEWLSFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKS
SADTEFSDESTTAERVLMKSPAPVLHQPQKYKDRGILHPKRSTEDRSDQSSVKSTDSSNY
PSPCASPSPPSSAKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTTD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggccgagcagcgtctccccgcggcccccggctcccggtgggggcggaggcggc
cccgcgccctgttgccctgggggcggcggccgtgccaaggggctgaaggacattcgtata
gacgaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgctatggggaccag
agagaaatggaatttccttcttctttgaccagtacagaaagagcctttattcatcgattg
agtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgctgttgaagctgaaaatcgg
gaaatgagcaagacaagtgggcgactcaacaacggcatacctcagattccagtaaaaaga
ggagaatctgaatttgattctttcagacaatctctgccagtgtttgaaaaacaagaggaa
attgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactggatctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtattccctgc
cgtatattttgtactcaaccaagacgcttagcagctattgctgtggctgaaagagttgct
gcagaaaggagagaaaggattggtcaaacaattggatatcagatccgtttagaaagcagg
gtttctccaaagacacttctgacattttgcaccaatggggtactgcttcgtacactgatg
gcaggagatagtacattgtcaactgtgacacatgttattgtggatgaagttcatgaaaga
gatcgatttagtgattttttacttacaaagttaagagatttactgcagaagcacccaact
ttgaaactaattctttctagtgctgccttagatgtaaatctttttataagatattttggg
agctgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttttggaa
gacattttaagaactactggatatacaaacaaagaaatgttaaaatacaaaaaggaaaaa
caacgagaggaaaaacaacaaaccacacttacagaatggtactcagctcaagagaatagt
ttcaagcctgaatctcagagacagagagctatcccaaatgtgactgaagagtatgattta
ttggatgatggtggtgacgctgtcttcagtcagctgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattat
agacatagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggcttctcaagt
caagtagaacagttaattagtatgggagccaatgttcatagtaaagcatcaaatggctgg
atggctttagattgggctaaacattttggccagactgaaattgtggatcttctagaatct
tacagtgcttctttggaatttggaaatctggatgaaagctctttggttcaaacaagtgga
agtgatctcagtgcagaagacagagagcttctgaaagcttatcaccatagttttgatgat
gaaaaagtagacttggatttgattatgcatcttctatacaatatctgccatagttgtgaa
gctggtgcaatattgatttttctacctggatatgatgaaattgttggtctgagggatcgc
atcctgtttgatgacaagcggtttgctgaaaatgcacatagataccaagtctttatgctt
cattcaaacatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgtt
cgaaaaataatcctttctaccaatattgccgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtatggatttccaaagctagcgccatacaacgaaaaggcagggcaggg
cgatgcagacctggaatttgtttccgactgttcagtagacttcgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattacaggaactgtgtttacataccaag
ctgttagccccagttaattgtgctattgctgatttccttatgaaagctcctgaacctcca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgaacttggataccatttggctgacttgccagtagagccacatctt
ggtaaaatggtcctgtgtgctgttgttttgaagtgtctggatcccatccttacaattgcc
tgcacgttagcttatcgagatcctttcgtcctgccaactcaggcctctcagaaacgtgca
gctatgctttgtaggaaacgtttcaccgcaggaactttcagtgaccacatggcacttctc
agagcattccaggcatggcagaaagctcgaagtgatgggtgggaacgagccttttgtgaa
aagaattttctttcacaagctaccatggaaataatcataggcatgagaactcagttgctt
ggtcaacttagagcgtcaggttttgtgagagcaagaggtggtggtgacattcgagatgtt
aacacaaattctgagaattgggctgttgttaaagctgcattggttgcaggcatgtatcct
catttagttcatgtggacagagagaatgtagtattggcagggccaaaggagaaaaaagta
cggtttcatcccacttcagttctcagtcagcctcaatataaaaagattcctccagctaac
ggtcaaactgcagcaatccaggcactgcccacagattggcttatttatgatgaaatgacc
agagctcataggatagctaatattagatgctgttcagcagtgacacctgtcactgtgttg
gtattttgtggaccagctaggttggcaagtaatgctcttcaggaaccttcatcttttcgt
gcggatggtattcctaatgacagtagtgatagtgaaatggaagacaggactactgctaat
ctggcaactttaaaacttgatgagtggctcagtttcaaactggagccagaggcagccagt
ttattgctgcaacttagacagaagtggcacagcttatttttacgtcgaatgagagctcca
tccaaaccttggtctcaagttgatgaagctactataagagcaattatagctgttttaagc
actgaagaacaatctgcaggcttacagcagccatctgggattggccaaaggccaagacct
atgtcttcagaagaacttcctttggcatcgtcttggaggtcaaataatagtagaaaaagt
tcagcagatactgaattttctgatgagtctactactgcagaaagagtattgatgaaatct
ccagctccagtactacaccaacctcagaagtataaagatagaggaattttgcatcctaaa
cgaagcactgaggaccggtcagatcaatcttctgtgaaatctacagacagcagtaattat
ccaagtccttgtgctagtccttctcctccatcctcagcaaagggctcaaaatctccttca
ccaaaaccaaacatgcctattcgatatttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaactcctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtgtacttggtattttctgttcaaggatctggacat
ttccagggattttctagaatgtcttctgagataggaagggagaagagtcaggattggggc
tcagctggactaggaggagtgtttaaggtggagtggatacggaaagaaagtcttcccttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaagttggtgaacagttgctccagttatgggaacgcctt
ccattgggagaaaaaaccacaactgattaa
DBGET
integrated database retrieval system
