Bos taurus (cow): 615807
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Entry
615807 CDS
T01008
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X3
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bta
Bos taurus (cow)
Pathway
bta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
615807 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bta03019
]
615807 (PNLDC1)
Enzymes [BR:
bta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
615807 (PNLDC1)
Messenger RNA biogenesis [BR:
bta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
615807 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
615807
NCBI-ProteinID:
XP_002690421
BGD-bta:
BT20018
Ensembl:
ENSBTAG00000015166
VGNC:
33082
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All DBs
Position
9:96061869..96090957
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AA seq
531 aa
AA seq
DB search
MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKE
KILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWKVHSAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FAGPDSPSIRPPILILTVRKWPGVSEQQVYREFQNLCKFDVRRLTRSQFLLMTNKFKDTR
SILKEYRCHPTLRISLYRYWRHSPDINCLLQVCSVITTWAFIAFLLGGAGL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacataggcgccgatgagtttgagcagagcctccctctgctgcaggagctcgtcctg
ggtgcggacttcgtgggtctggacatagagttcacgggccttcgttctaacctgtctggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
gttcagcagttcaccatctgtcagatcggattgtctgtgttctccagtattgaaggcgag
tcgaacaagtatgtagctcattcatgtaacttcttcctcttccctacgacatttggggtt
ttggactcagagttctctttccaggcttccagtgttcagtttttgaaccagtatggcttc
gactataacaagtttctcaaaaatgggatcccctatatgaacgaagaacaggagaagaaa
attaagcacaacattctgactgggaactggaaagttcgcagctctctggacaaagaccag
atcaaggtggtgattgacgaggtgacgcgctggctggacctggcggaggaaggggactgg
atgaccctccctggtattgctggcttccaggccttcgaggtccagctcgtactgaggaag
gccctccctgacatctggacggtgctgagagaccaaggggtgattgtgaagaaggtgagt
acgcagcaccgctggtatcttgagaccacctcctgtgatcgagagagctgctggaaggag
aagattcttctctctgcaaggggcttttctgtgtttttccagatgctggtgaaagcccgg
aagcccttagtgggacataacatgatgatggatctgctgcatctccatgagaagttcttc
agacctctcccagaaagctacgatgagtttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctgaacagtgacttgaaccccaccaagaactct
gggccagtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccac
gaagcggcatacgacgccttcctgtgcgggtcagttctgttgaaagtggcgcacctgctc
ctgtggaaggtacacagcgctgttcccatccccgagcccagcttcccgctctacctggac
gtgctggctccctacgtgaaccaggtgaatcttatccgagccggggtccccaaaatcaac
tttgcgggcccagactcccctagcatccgcccccccatcctcatcctcaccgtcaggaag
tggcctggggtcagcgagcagcaggtctaccgcgagtttcagaacctctgcaaatttgac
gtcaggaggctcacgcggagccagttcctgctcatgaccaataagttcaaggacacgcgg
agcatcctgaaggagtacaggtgccacccgacactgcggatctccctgtaccgctactgg
agacactccccggacatcaactgcctgctgcaagtctgcagcgtcattaccacctgggcc
ttcattgcgtttctcctgggaggagctggcctgtga
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