Bos taurus (cow): 616023
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Entry
616023 CDS
T01008
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
bta
Bos taurus (cow)
Pathway
bta03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
616023 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bta01009
]
616023 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bta04515
]
616023 (PCDH20)
Protein phosphatases and associated proteins [BR:
bta01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
616023 (PCDH20)
Cell adhesion molecules [BR:
bta04515
]
Cadherins
Protocadherins
616023 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
616023
NCBI-ProteinID:
NP_001193160
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All DBs
Position
12:477004..480875
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AA seq
951 aa
AA seq
DB search
MRGGGDACGSQAGAVSWSRATWRPRPDMGSLSRPSSSASHGNLPHLLLFFLFVGPFNCLA
SYSRATEILYSLNEGLPAGVLIGSLAEDLRLLPGAGGQDLLSQSPQHSVAERNPPLSFSL
ASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGIAWGGSISISSSPSADSCLLLL
DVLVLPQEYFRFVKVKIAIRDINDNAPRFPISQISVWVPENAPVNTRLAIEHPAVDPDMG
TNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSVIIAEDGGSPPL
IGSATLTIGISDINDNCPLFTDSQINITVYGNATVGTPIAAVQAVDRDLGNNAQITYSYS
QKVPQASKDLFHLNENTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIKVI
FRPPEIVPRYIANQIDGIIYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRLLPY
KPYSNEYLLETTKPMDYELQQFYEIAIVAWNSEGFQVKKMIKVQLLDDNDNAPVFLQPLV
ELTIEENNAPNAFLTKLDATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDRE
EKEKYRYTVRAVDSGKPPQESVATVVITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGV
ISVTDADTGQNGWVALSVVNQSDIFVIDTGKGLLRAKVSLDREQQSSYTLWVEAVDGGTP
PLSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSLVTEVYAVDKDTGMNAVI
AYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVN
LFVNDTVSNESYIENLLRKEPEISIEEKEPQISIEPTHRKAESVSCMPTLVALSVISLSS
ITFLTGMGICICLRREKKHHREDENLEVQTPLKGKIDLHMRERKPMDISNI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcggcggggatgcgtgcggctcacaggccggggcagtaagctggagtcgggcg
acctggcgcccgcgcccggatatggggagtctcagtcgtcctagcagcagcgccagccac
ggaaacctgccgcatctgcttctgttcttcctcttcgtgggaccgttcaactgtctggcg
agttacagccgggccacagagattctgtacagcctgaacgaggggctgccggcaggggtg
ctcatcggcagcctggcggaggacctgcggctgctgcccggcgcaggggggcaggacctg
ctgtctcagtcgcctcagcacagcgtcgccgagaggaaccctcctctctccttcagcctg
gcctcccaggggctgagtggccagtacgtgaccctagacaaccgctcaggggagctacac
acttctgcccaggagatcgaccgggaggccttgtgtcttgaaggaggcggagggattgcc
tgggggggcagcatttccatctcctcttcgccttctgctgactcttgtcttttgcttctg
gatgtcctagtcctgcctcaggaatactttaggtttgtgaaggtaaaaatcgctatccgg
gacatcaatgacaatgccccgcggttccctatttcccaaatatcagtttgggtcccagaa
aatgcacctgtaaacacccggctggccatagagcatcccgcagtggacccagatatgggc
actaatggtgttcagacctaccggttgctggactaccatcgtatgttcaccctggacgtg
gaggagaatgagaatggggagcgcaccccctatctaattgtcatgggactgttggacaga
gagacccaggaccagtatgtgagcgtcatcatagctgaggatggtgggtctccaccactg
ataggcagtgccaccctcaccattggaataagtgacattaatgacaattgcccactcttc
acagactcacaaatcaacatcactgtgtatgggaatgctactgtgggcacaccaattgca
gctgttcaggctgtggacagagacttgggaaacaatgctcagatcacctactcttacagt
cagaaagttccacaagcatccaaggatttattccatttgaatgaaaacaccggggtcatt
aaacttttcagtaagattggaggaagtgttctgcaaacacacaagctcaccatccttgct
aatgggccaggctgcatccctgctgtgatcactgccctggtgactattatcaaagtcatt
ttcaggccacctgaaatcgtccctcgttatatagcaaatcaaatagatggtattatttac
ctgaaagaattggaacctgttaacactccaattgcattctttaccataagagatccagaa
ggtaaatacaaggtgaactgctatctggatggtgaaggaccatttaggttattgccctac
aaaccatacagtaatgagtatcttctagaaacgacaaaacctatggattatgagctacag
caattctatgaaatagccatagtggcttggaactctgagggatttcaagtcaaaaaaatg
attaaagtgcaacttttagatgacaatgataatgctcctgttttccttcaacccttggta
gaactaaccattgaagaaaataatgcacccaatgcctttttgactaagctagatgctaca
gatgctgacagtggagagaggggccaagtttcatattttctgggacctgatgctccatca
tatttttccttagacagtgtcacaggaattctgacagtttctactcagctggatcgagag
gagaaagaaaagtataggtacacagtcagagctgttgactctgggaagccaccccaagaa
tcagtagctactgtggttatcacagtgttggataaaaatgacaacagccctaggttcatc
aacaaggacttcagcttctttgtgccagaaaattttccaggatacggtgaaattggagta
attagtgtcacagatgccgatactgggcaaaacggatgggtcgctctctccgtggtgaac
cagagtgatatttttgtcatagacactggaaagggcctgctgagagctaaagtctctttg
gacagagagcagcaaagctcctacactttgtgggttgaagccgttgatgggggtacgcct
cccctctcctctactgcaaaaatcacaattctccttctagacattaacgacaacccgcct
ctcgttttatttcctcagtctaacatgtcctacttgttggtgttgccttctactctccct
ggctcactagttacagaggtctatgcagttgacaaagacacaggcatgaatgctgtcata
gcctatagcatcatagggagaagagggcctaggcctgaatcctttagaattgaccctaaa
actggcaacattactttggaagaggcattgctgcagacagattatgggctccatcgttta
ttggtgaaagtgagtgatcatggttatccagaacctctccattccacagttatggtgaat
ctatttgtcaatgacactgtcagtaatgaaagctacattgagaatcttctaagaaaggaa
ccagaaattagcatagaggagaaagaaccacagatttcaatagaaccaactcataggaaa
gctgaatccgtgtcctgtatgcccacattagtagctctatctgtaataagcttgagttct
atcacattcttaacagggatgggcatatgtatctgtttaaggagagagaagaaacaccat
agggaggatgaaaatttggaagtacaaactccattaaaaggaaaaattgacttgcatatg
agagagaggaaaccaatggatatttctaatatttga
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