Bos taurus (cow): 617568
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Entry
617568 CDS
T01008
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
bta
Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:
bta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bta03036
]
617568 (SHOC1)
Chromosome and associated proteins [BR:
bta03036
]
Eukaryotic type
Meiosis-specific proteins
Others
617568 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
617568
NCBI-ProteinID:
XP_059745507
Ensembl:
ENSBTAG00000044004
VGNC:
52743
LinkDB
All DBs
Position
8:complement(101092571..101177345)
Genome browser
AA seq
1501 aa
AA seq
DB search
MFPAFKYCAIDYLNESVVRKKLWKNTLLLRIPSCLYQDDNYPANVIDNKFRRPWTRVSAV
SIWGETDISVLDQWKASLTVDDFLEKKTVTGMVTQLNCEFDEIVPSSNPNSQTEVEEASL
YTHKEYNEFFTLVSCLEKRPSLQAQDLSIDEEIVFVNYLTAYKSQLPTLHTLLSRLKLFL
VKDPLPDFKAQIPTEAKFFRECFSLQGDVKCLVEEDFYMDKEDFCQEKLKDTSSTLLECE
LLVPISHKQEVDIPSLSELKESLNLMPEIINYADENENLSKTDLTIKHGVDLEDIKCSSI
EIMAIQNQYETEYSQPEELEMPLTRLDPTNHHSSVNSLCAELQTFPSSPVCKINLLTAEE
SANKYHMLWQSESCRSSLNSFLIRVPRIEEPNNQYSLTDLKKIFSVEEEKLVVNPVNAEW
WKEARLNLTETLEPLSTYLCHNNLSSDDTKLETFLPTNVPQLEPWLEHEDCSSPLILINE
QSTNDHLSPPQKTPSPTKEVSDLHLSDEYVSVERPRKEEKPKNDLELGYGIIQNKENKDH
LELDSTVPSTESSSSSKIEKASFKHGKKWENNLDLLSDFIMLRNKYPTCTSKTEVTDDGK
DELQNEEEVSLTLQEERPIVCNNKTLEKTNQERRADNVIEIPASDSQCQAYSLLEAAASP
ILEKLVCLCTLPAANWKFATVSFDQTRFLLKEQEKIISDAIYQGKNEEREMTFKYAALLH
LLVTIRDVLLTCNLDTALGYLSNAKDIYKSVFGSCLYDIWRQLEIVQFIRGKKPEINYKI
RELQCQILNWMQNEQQIKVLVIIRMDSDGEKHLLIKILNKIEGLTLIVLHSNKRKDFLES
EGVLNSTSFCVVAPNQYIGADFPWSNFSFVVEYNFVENSCWTEHCEKLNIPYMAFKVILP
DTVLKRSSLLDSFGGFLLEIQIPYMFFASEGLLNTPEILQLLESNYNITLVERCCSESLK
LFGGTEHYVVMTIDEHSAVILQDLEELNCEKASDNIIMRLMALSFQYSYCWIILYAKKPL
NSEYHLTEKTLHHLALIYAALVSSGLKSEELDVKLIIAPGVEETALMIRQIADHNLMTSK
RDPHEWLDKSWLKVAPSKEEMYLLDFPSVTPLVAQLMLNKGPSLNWILLATLCQLQELLP
EVPEKVLKHFCGITSLFKISPSITESPQISSPQENRDQTRNFTSQSSASGSSDSVIQEHI
NYQYSDLGETVHEDTNSTSNYTSSLMELKEMPGILPSVSSYNQTSHWKESSCNPNTVQNN
SVLTNMEARNVSGNSFLNQNDSESDVFSLGLTEMNYETIISPINTQKRVTPHFINYQKKG
THEKKGPIKKELSAPVFSLEGSQPPLHWNFKRNVWEQQNHSFNLQSGAEQSTCDKWYSQK
DNLFINQRKYQSDELEGFICESSNAGTKKTFWKELPSVPSLDLSCASDSNVNQKEFNSLY
FYQRAGKCLGQKRHSESSSNSGDNNSLTDFTCLQPAQFKKQRLVYEKVPGRLDGQTRLRF
F
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcattcaaatattgtgcaatagattatttgaatgagagtgtagttagaaag
aagttgtggaaaaatactttattgcttcggatcccttcatgtttatatcaagatgacaat
tatcctgcaaatgttattgataataagtttaggaggccatggacaagagtttcagctgtt
tcaatttggggagagacagatatctcagtcttggatcaatggaaagcaagtctcactgtg
gacgatttccttgagaaaaaaacagttacaggaatggtgacccagcttaactgtgaattt
gatgaaattgttccaagttcaaacccaaactcccaaaccgaagtagaggaagccagcttg
tatacccataaggaatacaatgaattctttactcttgtcagctgcttagaaaaacgtcca
tcacttcaagcacaagatttgtccattgatgaagaaatagtttttgtaaattatttgacg
gcctataaaagtcagctaccaactttgcacactctgttgagtaggctaaaactattttta
gtaaaggatcccttgccagatttcaaagcacagatccccacagaagctaaatttttcagg
gagtgtttctctcttcaaggagatgtaaaatgtttggtggaagaagatttttacatggat
aaagaggacttttgtcaggagaaactgaaagatacatcatcaactttgcttgaatgtgaa
ttgttagtacctataagccacaaacaagaagttgatattccatcactctcagaactgaaa
gagtcattaaacttaatgccagaaataataaattatgcagatgaaaatgaaaacctttcc
aaaacagatcttactatcaagcatggagttgaccttgaggatataaaatgcagctccata
gaaattatggccattcaaaatcaatatgaaacagagtacagccaaccagaagagttagaa
atgccattaactcgtctagacccaacaaaccaccattcttcggtgaattcattatgtgca
gaacttcagacatttccatcttctcctgtttgtaaaattaatttgcttactgctgaagaa
tcagctaacaaataccatatgctatggcaatcagaaagctgccgaagctctctgaactca
tttttgatcagagtgccaagaattgaagagcccaacaatcaatattcacttacagatttg
aaaaagatattttctgttgaagaagaaaaacttgtggttaatcctgtaaatgcagaatgg
tggaaagaagcaagactaaatctgacagaaactttggaacctctaagtacatatttgtgt
cataataatttatcttctgatgatactaaattggagacatttttacctacaaatgtgcct
caattagaaccatggttagaacatgaagattgttcctctcctcttatacttattaatgag
caatctacaaatgatcatttatcacctccacaaaagactccatctccaactaaagaagta
tcagatttgcatctttctgatgaatatgtctctgttgaaagaccaagaaaagaagaaaaa
ccaaagaatgacctagaactaggttatggaataatccaaaataaagaaaataaagatcac
ttggaacttgacagcacagtaccatctactgaatcatcttcctcttcaaaaattgaaaaa
gcatcttttaaacatggtaaaaaatgggagaataatttggacctcttgagcgactttatt
atgctgcgaaataagtatccgacttgtacctcaaagactgaagtcacagacgatggaaaa
gatgaacttcaaaatgaagaagaagtttctttgactcttcaagaagaacgccctattgtt
tgtaataataaaaccctagagaaaacaaatcaggaaaggagagcagataatgtcatcgaa
attccagcatcagatagccagtgccaagcatatagtctcctggaagcagcagcttctcct
atcttagaaaaacttgtgtgcctctgtactcttcctgctgctaactggaaatttgccact
gtcagttttgaccaaacaaggttcctcttgaaagaacaagaaaaaataataagtgatgct
atttatcaaggtaaaaatgaggaaagagaaatgacattcaagtatgctgctctcttacat
cttttggtaacaattagagatgtccttttaacctgtaacttggacacagcattgggatat
ttgtcaaatgcaaaagatatctacaaaagtgtttttggttcctgtttgtatgacatttgg
cgacaactggagatagtacagtttataagggggaaaaagcctgaaatcaactataagata
agagaattgcaatgccagatactaaattggatgcaaaatgaacagcaaatcaaggtgctg
gttataataagaatggattcagatggagaaaaacatttactcattaaaatccttaacaaa
atagaaggtttgacactgattgtcttacattcaaacaaaagaaaagactttctggaatcc
gaaggtgttttaaacagtacaagtttctgtgtagttgcacccaatcagtacattggagca
gatttcccctggagtaatttctcatttgtggtggaatataattttgtagaaaactcttgt
tggactgaacattgtgaaaaattgaatattccttacatggcctttaaagtgattcttcca
gacacagttttaaagagaagcagcttgcttgatagttttggtggttttctcttggaaatt
cagattccatatatgttttttgcatctgaaggacttcttaatactccagaaatactacag
ttgttagaatccaactataacatcacactagtggagagatgctgcagcgagtcactgaaa
ctctttggaggtacagagcattatgtggtgatgacaattgatgagcactctgctgtaatt
ttgcaggacctagaagaattaaactgtgagaaggcatcagacaatatcattatgagactg
atggcattatcattccagtacagctattgttggataattttatatgccaaaaagccatta
aactcagagtaccatcttacagaaaagactcttcatcacctagcactgatttatgcagct
ttggtttcatctgggctaaaatcagaagaactggatgtaaagcttataattgccccagga
gtggaagagactgcactgatgattcgacaaattgctgaccacaatttaatgacctcgaaa
agagatcctcatgaatggttggataagtcctggcttaaagttgcaccgtctaaggaagaa
atgtacttacttgattttccaagtgttactccattggtggctcagctcatgttaaataaa
ggaccttcactgaactggatattgttagcaactctttgtcaacttcaggaactcctacct
gaagttccagaaaaagtgttaaagcatttttgtggcatcacttccttattcaagattagt
ccttccataacagaatcacctcaaatttcatcacctcaggaaaacagggatcagactaga
aactttacttctcagagttcagcttctggctcttcagattctgtcattcaagaacatatc
aattatcagtattcagacttaggagagacagtacatgaagacaccaacagcacttcaaat
tatacctcttcccttatggaattaaaagaaatgccaggcattttaccatctgtgagttct
tacaatcagaccagccattggaaagagtctagttgtaaccctaacacggtacagaataat
tctgttctgactaatatggaagcaaggaatgtgtctggtaattcctttctgaaccagaat
gattcagagtcagatgtcttttctttgggtctaacagaaatgaattatgaaactataata
tcaccaatcaacactcagaagagagtcacccctcactttataaattatcagaaaaaggga
acacatgaaaaaaaaggacctataaaaaaagaattgtcagctcctgtcttttcacttgag
ggttctcaacctcctcttcattggaactttaagagaaatgtatgggaacaacagaatcat
tcattcaacttacagagtggtgcagagcagagtacatgtgacaaatggtactctcagaaa
gataatttattcattaatcagcgaaaatatcagtcagatgagttagaaggcttcatctgt
gaaagttcaaatgctgggactaaaaagactttctggaaagaattaccatctgtccccagt
ttggatttatcctgtgcttctgattctaatgtaaatcaaaaagaattcaacagtctttat
ttctaccaaagagctggaaaatgtttaggacagaaaaggcactctgagtcttcatctaac
tcaggagacaacaactcattaacagatttcacgtgcttacaaccagcgcaattcaaaaaa
caacgtcttgtgtatgaaaaagtccctggtaggcttgacgggcaaactcgtctgaggttt
ttttga
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