Bemisia tabaci (sweet potato whitefly): 109032259
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Entry
109032259 CDS
T06019
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109032259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
btab03041
]
109032259
Enzymes [BR:
btab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109032259
Spliceosome [BR:
btab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109032259
Complex B
109032259
Complex C
U2 SnRNP specific factors
109032259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109032259
NCBI-ProteinID:
XP_018899837
UniProt:
A0A9P0F4T3
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MSYNKGSSSSGFGFSGFKMNARTSSRTVAIPPPPTAAISKQGYSTMSAITSNALSTTWGV
PKKRAKTEEEYFEDEEEQSTQKLEYIPAPGSPSYQGGNQSDDEEDPLDAFMAGIEKQVKK
EQGVKVTNKEKEKDKGLRFDIDEEDNEESYYRYMEENPLAGVKDEESDAEIEYDEDGNPI
PPPKKKEIDPLPPIDHSTIKYEDFEKNFYQVHEEIAKLTSEQVNELRRTFNIKVTGPSPP
SPVSSFAHFGFDDSLMKLIRKSEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTVAFLW
PMLIHIMDQKELQPGDGPIGLILAPTRELSQQIYVEAKKFGKAYNINVVCCYGGGSKWEQ
AKALEEGAEIVVATPGRMIDLVKMKATNLTRVTYLVLDEADRMFDMGFEPQVRSICNHVR
PDRQTMLFSATFRKRIEKLARDILSDPVRIVQGEIGEANTDVTQLVNVLPQNAKFSWLLN
QLVSFLSQGSLLIFVTKKLNAEELHNNLKLKEFDPLLLHGDMDQTERNRVISAFKKDDHS
ILVATDVAARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGLKGTAYSLVTDKDKDFA
GHLVRNLEGASQPVPKALLDLANQNAWFRKSRFKSGKGKSINVGGKGLGFRERPGLGSSE
ASGPSSCDFSDIVKSIPPRTGPGSDRLSAVKAAFKAQYMSQFTASEDHTWEQTLENPSGA
QKPAAPAKKRERKSRWDS
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaacaaagggagcagttcgtcgggatttggattcagcgggttcaaaatgaat
gcgcgaacatcctctcggactgttgccattccccctcctccaacagctgctatcagcaaa
cagggttactcaaccatgtcagccatcacaagtaatgctctctccacaacctggggagtt
cctaaaaagcgtgccaaaactgaagaagagtactttgaggatgaggaagaacaaagcact
caaaagctagaatacatccctgctcctgggagtccatcatatcaaggagggaatcaatct
gatgatgaggaagatcctctagatgcatttatggctggaatagagaaacaggttaagaag
gagcaaggagtcaaggtaaccaacaaagagaaagaaaaagataaaggacttagatttgat
attgacgaagaagacaatgaagaatcatactacagatacatggaagaaaatcctcttgct
ggtgtgaaggatgaagaatcagacgctgaaatagaatatgatgaagatggaaacccaata
ccccctcctaaaaagaaagagatagatcccttacctcctatagatcattctactattaag
tatgaagacttcgagaagaatttctaccaagttcatgaagaaattgcaaaactcacaagt
gaacaagtgaatgaattacggaggacgttcaacataaaagtcacaggcccttctccccct
tcccctgtctcttcgttcgctcactttggattcgatgactcactcatgaagcttattcga
aaatcggaatacactcaacctactccaatccaagctcaggctgttcctgcagctctgagt
ggacgtgacatcatcggtattgccaaaactggaagtggtaaaacggttgctttcttgtgg
ccaatgctgatacacatcatggatcaaaaagagttacaaccaggcgatggccctatcggt
ttgattttagcacctacccgagagttgtctcaacagatttatgtggaagcgaaaaagttt
ggcaaagcgtataatatcaatgtcgtatgttgctatggaggagggtcgaaatgggaacag
gccaaagctttggaagaaggtgcagaaatagttgttgctactcctggacgaatgatagat
ctagtcaaaatgaaagcgacaaacttaaccagggtgacctacctagttctagatgaagca
gacagaatgtttgatatgggttttgaaccacaagtgcgatcaatttgcaatcatgtgcgc
cctgatcggcaaacaatgttgttctctgcaacttttcgaaaaagaattgagaaactagcc
agggacattttaagtgatcctgttagaattgttcaaggagagatcggtgaagctaacact
gatgtaactcaacttgtcaatgttctaccacaaaatgcaaaattcagctggcttctgaat
caactagtatcgtttctttcacaaggatctcttctcatctttgtcaccaaaaagttgaac
gcagaagaacttcataacaacttgaaactcaaagagtttgatcctcttctcttgcatgga
gacatggaccagactgaaagaaatcgcgtcatcagtgctttcaaaaaggacgatcatagt
attcttgtcgcaaccgacgttgctgctcgaggtttggatatacctcacatccgcacggtt
gtaaattatgatgttgctagagatatcgacactcatactcatcgtattggacgaacgggt
cgtgctggactcaaaggaaccgcatattctttagtaactgataaagacaaagacttcgca
ggacatttagtcaggaatctagaaggtgctagtcaaccagtgccaaaggctctcctagat
cttgctaatcagaacgcctggttccgaaagtcaaggtttaagagtggcaaaggaaaatca
ataaatgtaggtgggaaaggtcttggttttcgagagcgacctggtttaggcagctccgaa
gccagtggtcctagcagctgtgactttagtgacatagtcaaatccattcctccaagaaca
ggccccggctctgatagactttctgctgttaaagctgctttcaaagctcagtatatgagc
cagttcacagcctcagaagaccatacgtgggaacaaactctagaaaatccgtccggcgct
cagaaaccagcagctccggccaaaaaaagagaaaggaaaagtcggtgggactcttaa
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integrated database retrieval system
