Bemisia tabaci (sweet potato whitefly): 109036352
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Entry
109036352 CDS
T06019
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
btab04147
]
109036352
00535 Proteoglycans [BR:
btab00535
]
109036352
00536 Glycosaminoglycan binding proteins [BR:
btab00536
]
109036352
Exosome [BR:
btab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109036352
Proteoglycans [BR:
btab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109036352
Glycosaminoglycan binding proteins [BR:
btab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109036352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
109036352
NCBI-ProteinID:
XP_018906069
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MIYCLLWFLSLLASEGGYHAARTVYKGNVNLLDAVTVLTDTRTKMVDGPDGFPVVELQPG
SDNKLPQRMLLPDKLDAEFAIRIAARLDSLKGGFVFAIVNPLETVVQLGVRLEPTSEQSM
NVNLYYTDPKLSVSQMIASFTVPFKLRRYFEFLIRVKKEEVVLASCKKSQEIRVNRVPME
LVFDSASTLYIGQAGPIINSPFQGALKEVRLFSSADVTEELCPKYLQAELNDESAEPSDA
QDTEFPFSDAEATTVTVQEDDLSSTDDDHGRREKIPDFPPPPPIDGNFRLGLKGEKGDRG
ESIRGPPGPPGPPGPPGPPFSGGEHSEDIGSGDDEKIKDLIVKLLPANKEFDGRRGLVGP
PGPPGTCACNLTTLFGSNNIPKLLPGPPGIPGIDGKAGPPGTPGLPGPPGEQGATGLPGE
KGDRGDVGAQGPEGIQGSKGEPGVDGAPGLPGAPGPPGPPGPYEVSIHDPSWKPRPIYKE
SGMIGLGSSLDATLGRPGSPGPKGEPGIDGAPGQKGDRGTAGAKGARGESGAKGAKGDKG
HPGAAGKQGFKGEPGVPGIDGVPGTPGENGRPAEKGEKGDTGLPGPPGPPGPAIPTFGSD
DETIASPQIGREMIYAGEKGDKGDHGDKGEPGEPGLPGMPGTPGAKGDLGLEGPPGLPGV
PGTPGPAGPVTVVSPDGEIVTVKGEKGDMGKRGRRGKQGPPGPQGPPGPPGEFGLPGRPK
GSQGRPGIPGLPGGPPGPKGDKGDSALMKGDKGEPGEVGFPGQPGNVAECSCTQGPPGPP
GLPGLPGLSITGPKGEPGMPGLSGRPIYGESSPHSHYGKPGMSSLEELRSLSGKTLQEVR
EESESAPGPQGPPGPPGPPGLPAESSQSSRRVGSGAVVFETLDQLLHSSAPLGTIAYIII
EQTLLVRVKLGWQYIALSNLILEPTEAPIPQFPSSPPPTAAPRLPLESSNLINNDPLPKE
SHSRHPRTLRLGALNEPHSGDVQGIRGADFACYRQARRSGLHGTFRAFLSSRTQNLDSIV
KLSDRELPVVNLKGDILFNSFMDIFDGKEGFFTHQSRIYSFNGKNIMTDPTWVQKIAWHG
AYETGERALEASCDAWNSNSGDKQGLASSLLSHKLLSQDKFLCNNKFAVLCIEVTSQSAE
RRRRRRNLEVDATDEDDDFELQMKEEQLQSHLKDIIME
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgatttattgtttgctgtggtttttatcgttgcttgcatcggaagggggttatcatgca
gcaagaacggtctataaagggaacgtgaatttgctggacgctgtgacggttttaacggac
acccggacgaaaatggtggacgggccggatgggttcccggtggtggagctccagccgggc
tcggacaacaagctcccgcaacggatgcttctgccggacaaactggacgccgagtttgcc
atccgcatcgccgcccgcctcgactccctcaaaggcggcttcgtcttcgccatcgtcaac
cccctggaaacggttgtgcagttgggtgtaagattagagccaacgagcgagcagtcgatg
aatgtaaatctctactacactgatccaaaactgtccgtctcccagatgatagcaagtttc
acggtccctttcaagctgagaagatacttcgagtttcttatccgcgtgaagaaggaggaa
gttgtcttagcctcttgcaaaaaatcccaggaaatccgagtaaaccgggtgcctatggag
cttgttttcgattcagcctcaactctgtacatcggtcaagcaggtccaatcattaactct
ccattccagggtgctcttaaagaggtcagactattcagctctgctgacgtcactgaagaa
ttatgtcctaaatatttacaggcggaactaaatgacgaatcagctgaacccagtgacgcg
caagacactgagttcccattttcagatgcagaggcgaccactgttactgttcaggaggat
gatctcagctcaacagacgatgaccatggtagaagagagaagattcctgattttccgcca
cccccaccgattgatgggaatttcagactaggactcaaaggggaaaaaggagaccgagga
gaatcgatcagaggaccaccaggaccaccaggtccaccgggaccaccaggtccgcctttc
tccggcggcgagcacagcgaggacatcgggtcgggagatgacgagaagatcaaggattta
atcgttaagctccttcctgccaataaagaatttgacggtagacgtggactagtcgggcca
ccagggcctcctggaacatgtgcctgcaacttgacaactctcttcggttcgaacaacata
ccaaagctcctgccaggtcctccaggaattcccggaatagatggcaaagctggacctccg
gggacaccgggattaccaggacctcctggagagcaaggagcaaccggtcttcctggcgaa
aaaggtgatcgtggagatgtgggggctcaaggtccagaagggatccaaggatctaaagga
gaaccaggcgttgatggggcgccaggtttgccaggcgcgcccgggccaccaggtcctcca
ggaccgtatgaagtatctatccatgacccgagttggaaaccaagaccaatttacaaggag
tctggaatgataggacttggctcaagtctagacgcaactcttggaagaccaggaagtcct
ggtcctaaaggagagccaggtattgatggagcgcccgggcagaaaggagatcgtggaact
gcaggcgccaagggggctagaggtgaatcaggtgctaaaggagctaaaggtgataaggga
catccaggtgcagctggaaaacaggggttcaaaggggaaccaggagtaccaggaattgat
ggcgtccctggtaccccaggagaaaatggccgtccagcagaaaaaggagaaaaaggagac
acaggtttgccgggacctccaggtccaccaggtccagcaataccaacatttggctcagat
gatgaaactattgcgtctccccaaatcggcagagaaatgatttatgccggtgaaaaaggt
gacaagggtgaccacggtgataaaggagagcctggtgaaccaggtttacctggcatgcct
ggcacaccgggagcgaagggcgatctcggattggaaggtccaccagggttgccaggagta
ccaggaacaccaggacctgctggaccagtcaccgttgtgagtcctgatggagaaattgtt
actgtcaaaggagaaaagggagatatgggcaagcgtggtagaagagggaaacagggccca
cctggaccccaaggccctcctggtccaccgggagagttcggattgcctggcagaccgaag
ggttcacaggggcgacctgggataccagggcttcctggagggccacctgggcccaaagga
gacaaaggagattcagctttgatgaaaggagacaaaggtgaaccaggagaggtaggcttt
cctggtcagcccggtaacgtagcagaatgttcgtgcacacagggacctccaggtccacct
ggattaccgggattgcctggactttcaataactggacccaaaggagaacctggaatgcca
ggattgtcgggcaggcccatttatggagaatctagtcctcattctcattatggcaaacct
ggaatgagcagcttggaagaattgagatctttgtcaggaaaaaccttgcaagaagtgcgg
gaggagtcagagagtgcaccaggacctcagggaccacccgggcccccaggacctcctggc
ctacctgctgagtcctctcaatcttcgcgtagagtaggttctggagcagttgtatttgaa
acgctcgaccaattgctacattcatcagcaccattggggaccatagcttatattatcata
gaacaaacactgctcgttcgtgtgaaattgggatggcagtatattgctttgagcaattta
attttagagccaacagaagccccgattcctcagttcccatcttcgccaccaccaacagca
gctcctcgtcttcctttggagtcatcaaatttgattaacaatgacccattaccaaaagaa
agccatagtcgacatccaagaacgcttcgacttggtgctctgaatgaaccacactcggga
gacgttcaaggcattcgaggggcagactttgcatgctaccgccaagcaagacgatctgga
ctgcatggaactttccgagctttcttgtcatcaagaacccaaaacttggactcgatcgtg
aaactctcagatagagagctgcctgtggtaaatctcaagggagatattctcttcaactcg
tttatggatatttttgacggcaaagagggtttcttcacccatcaatcaagaatctatagc
ttcaatggaaagaatatcatgaccgaccctacatgggttcaaaagattgcatggcacggt
gcttacgaaactggagagcgggctttagaagcctcttgtgatgcctggaattctaactca
ggggataaacaaggtctagcgtcttctttgttgagtcacaaattattgagtcaagataaa
ttcttgtgcaataataagtttgcagtcctgtgcatagaagtcactagccaaagcgccgaa
agacgtcgcagaagacgaaacttagaagtagatgccacggatgaggatgacgattttgag
ctccaaatgaaagaagagcagcttcaaagccacttgaaagacattattatggaataa
DBGET
integrated database retrieval system
