Bemisia tabaci (sweet potato whitefly): 109037355
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Entry
109037355 CDS
T06019
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109037355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109037355
03041 Spliceosome [BR:
btab03041
]
109037355
03009 Ribosome biogenesis [BR:
btab03009
]
109037355
03016 Transfer RNA biogenesis [BR:
btab03016
]
109037355
Enzymes [BR:
btab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109037355
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109037355
Spliceosome [BR:
btab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109037355
Complex C
U4/U6.U5 tri-SnRNP related factors
109037355
Ribosome biogenesis [BR:
btab03009
]
Eukaryotic type
Pre-60S particles
Helicases
109037355
Transfer RNA biogenesis [BR:
btab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109037355
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109037355
NCBI-ProteinID:
XP_018907500
UniProt:
A0A9P0F5Z9
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MADFDVFDVFDEATDDSKEVKDEVAETPTSATNSNDQKPAKRQLDENEVLAEDSKKFKSE
TDEILSGINLEEVAPRIEVYTVETLEACTHEVAFPPGIPYTSLVLPNGPPAKEYPFILDP
FQKEAILCIDNNQSVLVSAHTSAGKTVVAEYAIAASLRDKQRVIYTTPIKALSNQKYREF
FEEFKDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKER
GVVWEETIILLPDNVHNVFLSATIPNARQFVEWIAHLHKQPCHVVYTDYRPTPLQHYLFP
NGGDGIHLVVDESGKFREDNFNSAMTVLANAGDNAKGGDHRAGRKGGPRNGQETNCYKIV
KMIMERSFAPVIVFSFSKKDCEVYAMQMAKLDFNTSDEKKLVDEVFNNAMDVLNDQDRKL
PQVENVLPLLRRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLF
TASQKFDGKEMRSITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVSPENGKALLQGSADP
INSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNNSSIPVLYEKVQKKQKEVDAIVIA
NETQIASYYNIREQLDHLSKVLQTYVVNPVYLTPFLQPGRLVKIKTETEEYEWGIIINFR
KEDSGQNPALSSMTLIVDVLLHVAVDKEGKTERRPCPPGEQGEMEVVPVLHKVISQISSL
RIHYPKDLRPPDNRKSVLKSIREVKKRFNGDIPLLNPVTDMHIKEESFLDLVKRIQSYEQ
RLFDHPLHDKPQLETMYNAYRLKTETLSELKMLRQELKRTMSLVQMEELKCRKRVLRRLK
FCNASDIIETKGRIACELSSGEELLMTEMMFNGMFNDLDVPQCVAILSCFVCDEKSNEVP
KRSAELSGLLRQMQEMARRIAKVTVECKIPVDVEKYVEQFKPFLMDVCYAWCKGASFIDV
LQMTDIFEGSIIRAMRRLEEILRQLVQAAKGIGNTDLENKFSEGIRLIKRDIVFAASLYL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggccgacttcgatgtatttgacgtttttgacgaggcaactgatgattccaaggaggtc
aaagacgaagtcgcggaaacgccaactagtgcgacaaattccaatgatcaaaaacctgcc
aagaggcaacttgatgaaaatgaagttctcgcggaggactcaaagaaattcaagtcagaa
acagatgaaattttgagtggtataaatttggaagaagttgcaccgaggatagaagtttac
accgtagagacactagaagcatgtactcacgaagtagcattccctcctggcatcccttac
acttcactagtccttccaaatgggccacctgccaaggaatatccattcattttagatcca
tttcaaaaggaagcaattttgtgtattgataataaccagtcagtgttggtatcagctcac
acctctgctggtaaaacagttgttgctgaatatgcaatcgctgcttcgctcagagacaaa
cagagagttatctataccactccgatcaaagctttgagtaatcaaaaatatcgagaattt
tttgaagagttcaaagatgttggtctcataactggagatgtcacaattaatccaagtgct
agctgtttgatcatgaccacagagattttacgtaacatgttgtatcgaggatcagaagtg
atgcgtgaagttggttgggtcatttttgatgaaattcactacatgagggataaagaaaga
ggagttgtgtgggaagaaacgattattttactaccagacaatgtgcacaatgtatttcta
tctgcaacaatccccaatgctcgtcagttcgttgagtggatcgctcatcttcacaagcag
ccatgccatgtcgtttacactgattacagaccaacgcctcttcaacactatcttttccct
aatggaggtgatggaattcaccttgttgtcgatgaaagtggaaagttcagggaagacaac
ttcaactctgcgatgacagtcttagcgaacgcaggagataatgcaaaaggaggtgatcat
agagctggtcgcaaaggtggacccagaaatggacaagaaacaaattgctataaaatcgtc
aaaatgataatggaacgaagttttgcccctgtaattgtattctccttcagcaagaaagac
tgtgaagtctatgccatgcaaatggccaaactagacttcaatacctctgatgaaaagaag
cttgttgatgaagtttttaacaatgcaatggatgttttaaatgaccaagatcggaaatta
cctcaagtcgagaatgtgttaccattattaagaagaggaattggtattcatcatggaggt
ttattgccgattttgaaagaaactatagaaattttgttctctgaggggcttatcaaagct
ttgtttgcgactgaaacttttgcaatgggattgaacatgcctgctcgtactgttcttttt
accgcctcccaaaagtttgatggcaaagaaatgcgttctataacatctggagagtacatt
caaatgtctggtcgtgctggaagacgaggtcttgatgacaaaggtatagtcattctgatg
gtagacgaaaaagtcagtccagaaaatgggaaagctcttctacaaggttcagcagatcct
atcaactctgcttttcatctcacctataatatggttttaaatcttcttcgtgttgaggaa
attaatcctgaatatatgctagaaaggagtttcttccagttccagaacaattccagtatt
ccagttctatatgaaaaagttcaaaagaagcaaaaagaagtggatgcaatagttattgcc
aatgaaactcagattgcttcctactacaatattcgagaacaattagatcacttgtcaaaa
gttttgcaaacctatgtggtgaaccctgtctatctaacacctttcctacaacccggccga
cttgtcaagattaaaacagaaactgaagaatatgagtggggtatcataatcaacttccgc
aaagaagactctgggcaaaatcctgctctatcgtcaatgactctcatcgttgatgttcta
ctgcacgttgcagttgacaaagaggggaagacggaaaggcgcccatgtcctcccggtgag
caaggtgaaatggaagttgtgcctgtacttcataaagtcatctctcaaattagctctctt
cgaatacactatccaaaagatctgaggcccccagacaatagaaagtcagttctcaaatca
attcgggaagtgaaaaaaagattcaatggtgatattcccctgttaaatcctgtaacagat
atgcacatcaaagaagaatcatttttagatttggtaaaaagaattcagagttatgaacaa
agactcttcgaccatcctttgcacgataagccacagcttgaaaccatgtataacgcctat
agattgaaaactgagactctgagtgaattgaaaatgctgcgacaagaattaaaaaggaca
atgtcacttgtgcaaatggaagaattgaagtgccgtaaaagagtgttgaggagattgaaa
ttttgtaatgcctccgatattattgaaacgaaaggtagaatagcttgtgagttgagcagt
ggtgaagaattactcatgactgaaatgatgttcaatggaatgtttaatgaccttgatgtt
cctcaatgtgttgctattttaagctgttttgtctgtgatgagaaaagtaatgaagtaccc
aagagatcagctgaactttcaggtcttctcagacaaatgcaggaaatggcaaggagaata
gcaaaagtaacggtagaatgcaaaattccagtggatgtggaaaagtatgttgaacaattc
aagccttttctaatggatgtgtgttatgcctggtgtaaaggagcatccttcattgacgta
ctacaaatgacggacatattcgaagggagtatcatcagagccatgagaagattagaagaa
attcttcgacaattagttcaagcagccaaaggaattggaaatacagatctagaaaataag
ttcagtgagggcattcgattgattaagagagatattgtttttgctgctagtctatatctg
tga
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