Bemisia tabaci (sweet potato whitefly): 109037503
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Entry
109037503 CDS
T06019
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109037503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109037503
Enzymes [BR:
btab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109037503
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109037503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
109037503
NCBI-ProteinID:
XP_018907759
LinkDB
All DBs
Position
Unknown
AA seq
544 aa
AA seq
DB search
MCNVTKKNFTECLSNIKDELKTATFVAIDSEFSGLLSDAEFKSSLFDSGDDRYLKLKSCL
QQVIMMEVGLSIFKYDRDTHAFKASVYNFYVFPQPFGSIDIRFLFQASSVQFLCLHGFDF
NKVMYEGIPYLNVKQEIQIREEIQKGSLFRHLERNISMETERILQNECSKVAEWASTSIV
GDDLLLKVYWLGEEPKLMNFILHQEIRRRFHNLWTYTAPEEQVRVVRITESQHKDLVKKG
VSKDLEDSVIDALVGFSKIVKLLMEFKKPIVGHNLLLDLLILHNQFYLPLPKTYKEFKAS
IRLLFPQVYDTKFLSFELKRLLKKEDAWTVNTLQELYNYFKKGKGTCMVIYSPSINFTDD
IDESCIKYHEAGWDSFVTGYCFVKIANMFAVYKENKFFQASRMLTCTEIFNAIKHMRGRV
NLIRANISNLNLEGDDPLSTRPELLYVASRNFSCPIDLNKVTELFARYGSVDVKPYSSGS
ALVAVSTHGCAQDILRDFKNSKHLKVSSFNRFKHSPIAKAAVWTGVLAMTSLCSWLTYKH
VLKK
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaatgtgaccaagaagaactttacagagtgcttatcgaacatcaaggatgaattg
aaaactgccacctttgtcgcaattgattcagagtttagtgggttattatcagacgccgag
ttcaagagtagtctatttgactcaggtgatgataggtacttgaaacttaaatcatgcctt
cagcaagttatcatgatggaagttggtctctcaatattcaagtatgatcgagatacacat
gcgttcaaagcttcggtgtacaatttctatgtttttccacaaccattcggatccattgat
atacggtttctctttcaagcctcctcggtgcagtttttgtgtctacacggatttgatttc
aataaggtgatgtacgaaggtattccatatttgaatgtaaagcaagaaattcaaattcga
gaagaaatccagaaaggttcgttgttccgtcatctagaaaggaatatttcaatggaaact
gagagaattctgcaaaatgaatgcagcaaagttgctgaatgggcctccacctctattgtt
ggagacgatttactccttaaagtctattggctgggagaagaaccaaaacttatgaatttt
atacttcatcaggaaattcgaagaagatttcataacttatggacatacactgctcctgaa
gaacaggtccgtgtcgttagaatcactgagagccagcacaaggatttggtcaagaaaggt
gtttcgaaagacctagaagattctgtgatagatgcactcgtaggtttttcaaaaattgtg
aagctcctaatggaatttaaaaagcccattgtgggtcacaatttacttttggatttgtta
atcctgcataaccagttttacctacctttaccaaaaacgtacaaagaattcaaagccagt
atacgtttgttgtttcctcaagtttatgatacaaaatttttgagcttcgagctgaaacgg
ctgttgaaaaaagaagatgcatggactgtaaacactttgcaagagctgtataattatttc
aagaaagggaaaggcacctgtatggtcatatactcaccatccattaacttcactgatgac
attgatgagagctgtataaaataccatgaggctggttgggattcttttgtgacagggtac
tgttttgtcaaaatcgcaaacatgtttgctgtttataaggagaacaaattttttcaagcc
tcacgaatgttgacctgcactgaaatatttaacgcaatcaaacacatgcgaggaagagta
aatttaattcgagcaaacatttccaacttgaatctggagggtgatgatccactttcaacc
agaccagaacttctatatgtggcttctagaaatttttcttgtcctatcgatttaaacaag
gttacagagttatttgcaaggtatggttctgttgatgtgaaaccgtattcaagtgggtca
gcattggttgctgtatcaacgcatggatgtgcacaagatatcctaagggacttcaaaaac
agcaagcaccttaaggtgtcatcttttaataggtttaagcattcgccaatagccaaggca
gctgtgtggactggagtattagccatgactagtctttgctcttggctaacatacaaacat
gttttaaagaaatga
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