Bemisia tabaci (sweet potato whitefly): 109037606
Help
Entry
109037606 CDS
T06019
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109037606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109037606
Enzymes [BR:
btab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109037606
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109037606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
109037606
NCBI-ProteinID:
XP_018907911
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MEVTKDNFQSLLPDIKKSIDEASFLAIDGEFTGLNDGGPRANPFDTPAQYFDKIRNGCSE
FLLIQFGLCVFKYNQTLKRFTHTAYNFYIFPCPINRDVPDFRFRCQSSSLNFLACNNFDF
NKLFKSGIPFLTHDAEQELLKDIEEREKQLNSSNLPNRPSETPIKIPDDLKENVDSACNK
IQSLIDKGKPGDSIEIEEPNGFARKLIYQAVDKNFSTDPIIMESKKQPNRTISLIVTKGA
SRQELERIKSMKALEEMKARLKETVGFSAIIRLISESGKLVVGHNMFLDIFYTISQFCTP
LQSSYEEFKEITHFTLPKVIDTKVMCSLAPLKEKIRSSVLPHLLETIQTEPFEMQQIAMD
KEGSGYALKDVKEHEAGYDAFMTGVCFLALYDHLNSLKKLDALNYSSSYISNAPALKDFI
NKVYLMRRFDAPYINLGGKDPVLFRRNVFHVDFPKEWATSDLISLFKPYGDVDVVWCNST
SAWVSLYDKSNNTIQKVIKNLVNCTEPKNYTVRTFAQYQDYLESMSTPVTNQSPSMGFRK
RKLLEMASPDAGNSAKTPKIEPTTSNASEDGDGEDEKSSNNLTGESAEMEEGSENGSAET
DGEEEATSAEEEEGETSENGEEVEEEEEEEEEEEEEEDELDENGVEELKSKGLTTNSKQP
GKSGRPQKASNSKSKKLFQENNAWE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaacgaaagataattttcaatccctcctcccggacataaaaaaatcaatcgat
gaagcctctttcctggctattgacggtgaattcactgggctcaatgatggtggtcctcga
gccaatcctttcgatactccagcgcaatatttcgacaaaatacgaaatggatgctcggaa
tttttattgattcagtttggtctctgtgttttcaagtataatcagacccttaagaggttc
actcatactgcttacaacttctacatattcccatgcccaatcaacagagatgttcctgat
tttagatttcgttgccaaagctcatcgttaaatttcctagcctgcaacaacttcgatttc
aacaaactgttcaaaagtggaattccattcttgacacatgatgcagagcaagagttattg
aaagatattgaagaaagagaaaagcaactaaactcgagtaatttgcccaatagacctagc
gaaacgccaattaaaattcctgatgatctgaaagagaatgttgacagtgcctgtaataaa
attcaatcgctgatcgataaaggcaagccaggtgattcaattgaaatcgaagaacccaat
ggttttgcacggaaacttatttaccaggctgtggataaaaacttctctactgaccccatc
atcatggagtccaagaagcagccaaatcgaacaatatctttgattgtgactaaaggcgca
agcaggcaagaattagagaggattaagtctatgaaagcattagaagaaatgaaggcacgt
ctaaaggaaactgttgggttctcagcaattattaggcttatatctgagtctggtaaactt
gtcgttggccacaatatgttcctggatattttctacactatatctcaattttgcactcca
cttcaatctagctatgaagaattcaaagaaataacccatttcacactgcccaaagtgata
gatactaaagtgatgtgttctttagctcctctgaaagagaaaattcgatcaagcgtccta
ccacaccttctagaaacgattcaaacagagccttttgaaatgcagcagattgctatggac
aaggaaggatctggctatgccctgaaagacgtcaaggaacacgaagcaggatacgatgca
tttatgaccggagtctgttttttagccttgtatgaccacttaaattccttgaagaagctt
gatgctttgaactatagtagctcttacatttcaaatgcgccagctttaaaagatttcatc
aacaaggtgtaccttatgaggagatttgatgccccttacatcaatttaggtggcaaagat
cctgttctctttcgaagaaacgtctttcatgttgattttcctaaagagtgggccacttct
gatctaatcagtctcttcaaaccttatggtgatgtggatgtagtctggtgcaattcaacc
tctgcctgggtctctctctatgataaaagcaacaacacgattcagaaagttatcaagaat
ctagtgaactgtactgagccaaagaattacacagtccgaacatttgcccagtatcaagac
tatctagagagcatgtccacccctgtaacgaatcaatcgccttcgatgggattccgaaag
cgaaaactcctggaaatggcttcacctgatgctggaaactctgcaaaaacgccaaagatt
gagcctacaacctcgaatgcatctgaagatggcgacggcgaggacgagaaaagctccaac
aacctgactggagagtcggccgagatggaggagggctcggaaaatggcagcgccgagacg
gacggagaggaggaggctacatcggccgaggaggaggaaggagagacctcggagaatggt
gaagaggtggaagaggaagaagaagaagaagaagaagaagaagaagaagaagacgaactt
gacgagaacggagtcgaagaactcaaaagcaaaggactcaccacaaattcaaagcaaccc
ggaaaatctggcagaccccaaaaggcatcgaatagcaaatcaaagaaattgttccaagaa
aataatgcttgggaatga
DBGET
integrated database retrieval system
