Bemisia tabaci (sweet potato whitefly): 109038087
Help
Entry
109038087 CDS
T06019
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109038087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109038087
Enzymes [BR:
btab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109038087
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109038087
mRNA degradation factors
3'-5' decay
Ski complex
109038087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
nSTAND3
ATPase_2
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
109038087
NCBI-ProteinID:
XP_018908568
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MPTDLLHFMENNWPPVLPDVKKTLENFIINNDELPYESTKTLPRERNESNVIHAREYLPC
RTTLFVEDIQEEEDVESGHGYHEIILTDETWEQAFFDPVDPDTDSDSIVKPSLKKQALLS
NVFKATSNSVGSSLINCELKTVPPGLDHGMDFGSAFKDYMTQKSAKSEVSINLSFQQMSL
DAESEILESTTESDKKDDEGEDNYGSSLEKEIIQNLPSKINHNMCVLDISKVTYSQASIK
KTEWAEILDSGRDVDLEFKKLNLATSFNFELDGFQKQGIVKLEEHANVLIAAHTSAGKTV
IAEYAIAMALKHKTKVIYTSPIKALSNQKFRDFKDKFDDVGLITGDFQMNQLSSVLIMTT
EILRSMLFNSSKVIQELEFVIFDEVHYLNDTERGRVWEEVLILLPSSVQIIMLSATISNT
FDIANWVGRTKQKKVFVISTPKRPVPLCHFVYLGVNEQTENEIYLIREGDGVFQKDGYRK
ALEVWKRIGGPYCLTNPKKKPNQSYEKREKGVSPRDKNEKRMWKTLLGFLKKEKKLPVVI
FTLSRVRCDKNANSLLSEELTTGEEKKHIQGFFHFSISQLKEEDRKLPQVLKLQELLMSG
IGVHHSGIIPILKEVVEILFQKGFVKCLFATETFAIGINMPAKSVVFDSLIKFDGKEKRL
LTSAEYIQMAGRAGRRGIDEKGTVIIMAKDDMQPAIKVERMITGQALQIKSQYVLTYSTI
LNSLRVTNLFSVENMMQHSFMEFGSQSVNDKHRKELQKLENIQVSIPDRVKNLLFEFYDT
ALEFLEIWNKIKTDSIMDKEINKILVEGRILLITYREHINKLAVILSVDHRRMEYKVLVL
SDSTKDADSNSVERPDLWYNMMSLLRRREIYKPQITDKDIVITINLTNILGSTSRVLKAN
FELVSQDWGTRQIPRFRDKQPGENCMLAIRTLSEMSRTVNAKEILWTSETCPFRTLSFVS
CKEMLSKLETKLSTFSEVSKYLNYFEDVFENKKIHMRRKELKCLLSPENMDLHQDYKEKI
AVLESLEFIDKQRKVLFKGHIACQMGTQELIIVQLLMNNVFMELSSAEVAALLSALVYKG
KEEPRPDLCTISTPMQKAIEMFDNIYASIAELERRYMTRGESWEYANSEPNFYLLPVIYE
WAKESSFVEIMKLTKIQEGIIIRTIQQLHEMISDVRDATKLIGLMDLGEKMDDAARRIRR
NIVFSASLYTNPLSS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccgatcttcttcatttcatggaaaataactggccaccagttctaccagatgtc
aagaaaacattggaaaatttcatcattaacaatgatgaactgccgtatgaaagcacaaaa
actctacctcgggaaaggaatgaatcaaatgttattcatgcaagggagtacctgccgtgt
cgcactactctgtttgttgaggacatacaggaggaagaagatgttgaaagtggacatggg
taccatgaaatcattttgactgatgaaacatgggagcaggcattttttgatccagtagat
cctgacaccgactctgacagtattgtgaagccgtcgctcaagaagcaggctctactttca
aatgtttttaaagccacttctaactctgtcggtagttcacttatcaattgtgagctaaag
actgttcccccaggcctagatcatggcatggactttggatcagcttttaaggattacatg
acacagaaatcggcgaaatccgaagtgtccattaatctgagttttcagcaaatgtctttg
gatgcagaaagtgaaatccttgaatctacaacagagtcagataaaaaagatgatgaaggc
gaggacaactatggcagtagtcttgagaaggaaatcattcaaaatctaccatcaaagata
aatcacaatatgtgcgtgctagatatctccaaagtaacatattcgcaagcaagcatcaag
aaaactgaatgggctgaaattctggactctgggcgagatgttgatttggaatttaagaaa
ctgaacttagctacatcatttaattttgaattggatggatttcagaaacaaggtattgtt
aaattagaggagcatgccaatgtgctgattgctgctcatacatctgcgggtaaaactgtt
attgctgagtatgccatcgcaatggcgctgaagcataaaaccaaggttatctacacctcg
ccgatcaaagcattgtcaaatcaaaaattccgcgacttcaaagataaatttgatgatgtt
ggtcttataacaggtgattttcaaatgaatcaactgtcctctgttcttatcatgacaaca
gaaatactgaggtccatgctcttcaatagctccaaagtcatccaggaattggagtttgta
atatttgatgaagttcactatctgaatgacactgagcgaggtcgtgtttgggaggaagtc
ttaattttgttaccttcaagtgtccaaatcatcatgttaagtgcgactatctctaacacc
ttcgacattgccaactgggttggacgtaccaagcagaaaaaagtttttgtcatttcaacg
ccaaaacgtcctgttcctctctgtcattttgtatacctgggtgtaaatgagcaaacagaa
aatgaaatctacctcattcgagaaggggatggagtttttcaaaaagatggataccgtaaa
gccctcgaggtatggaagaggattggcgggccgtactgtttaaccaacccaaagaagaaa
ccaaaccaaagttatgaaaagcgagaaaaaggggtgagtccccgagacaaaaatgaaaaa
aggatgtggaaaacattgctaggcttcctaaaaaaagaaaagaaactgcctgttgttatt
ttcaccttgtccagagtcagatgtgataaaaacgccaacagcctgttgagcgaagaactg
actactggtgaagagaagaaacatattcaaggcttctttcacttcagcatctcacaactt
aaggaggaagacaggaaactgcctcaggttttgaagttgcaggaacttctcatgagtgga
ataggtgtgcaccacagtggtatcatcccaattttaaaggaagttgttgagattttattc
caaaaggggtttgtaaaatgtctttttgccacggaaacttttgcaattggaatcaatatg
ccagcaaagtctgtagtatttgattctctaatcaagttcgatggcaaagagaaacggttg
ctaacctctgctgaatacatacagatggcaggccgtgctggtaggcgaggtattgatgaa
aaaggcactgtcatcattatggcgaaagatgacatgcagcccgctatcaaagttgaaagg
atgattacaggtcaagcattgcagataaaatcacagtatgttctcacgtactcaaccatc
ctaaacagtttgcgagtaacaaacttattttcagtggaaaacatgatgcagcatagtttt
atggagtttggatcgcagtccgtcaatgacaaacaccgtaaagaattgcagaagcttgaa
aatattcaagtgagcatcccagacagggttaagaacttgctctttgagttctacgacact
gcacttgagttcctcgagatctggaacaagataaagacagactctatcatggataaagag
attaacaagatacttgtagaaggtcgtattctcttgatcacttaccgtgaacatatcaac
aaattagcagtaattctctctgttgatcacagaagaatggaatacaaggttctagttttg
agtgattccacgaaagatgcagacagtaactccgtagaaagacctgatctttggtacaac
atgatgtcactgctacgtaggagggaaatttacaagccccaaattacggacaaagacatt
gtgataacaatcaatctgaccaacattctaggaagtacaagccgagttcttaaagctaat
tttgaactcgtgtctcaggattggggtacccgacaaattcctagatttcgggacaaacaa
ccaggagaaaactgcatgctggctatcagaacacttagtgaaatgtcgcggacagttaat
gcgaaagaaattctgtggacaagtgaaacatgtcctttccggacactctcttttgtatcg
tgtaaggaaatgttgagtaagcttgagactaaactaagcacgttctcggaggtttccaag
tatttaaactattttgaagatgtttttgaaaacaaaaaaattcatatgcgtagaaaagaa
ctcaagtgccttctctcaccagaaaacatggaccttcatcaagattacaaagagaaaatt
gctgtactggagagcttggagttcattgacaagcaaagaaaggtgctattcaaaggtcat
attgcatgtcaaatgggaacgcaagagttgattattgtccagctcctgatgaacaatgtc
tttatggaattatcatctgctgaggtagctgcattgttgtctgctcttgtttacaagggc
aaagaagaaccccgtcctgacctttgcacaatatcaactcctatgcaaaaagccatcgaa
atgttcgataacatctatgcctccattgcagaacttgagcgtcggtacatgacccgtggt
gagtcatgggagtatgcaaactcggaacccaatttttacctgctgccagtaatctatgag
tgggccaaggagagctcctttgttgaaatcatgaagctaaccaaaattcaagagggtatt
atcattcgaacaatccagcagctgcatgagatgatatctgatgtcagggatgcaacaaag
ctgattggactgatggatctaggagagaaaatggatgatgctgctcgacgtatccgcagg
aatattgtgttttcagctagtctatatacaaatcctctttccagctag
DBGET
integrated database retrieval system
