Bemisia tabaci (sweet potato whitefly): 109038869
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Entry
109038869 CDS
T06019
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109038869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109038869
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109038869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_Vps41
eIF2A
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_SCAP
Tricorn_2nd
Beta-prop_WDR41
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
109038869
NCBI-ProteinID:
XP_018909648
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MITITPQQFSQPPPFVPNVSVPPPNFHANQPPPQRFHSGHAGQIRHNNYFPQFRPQFRPN
NALFDPDFDGKRLRKSTMRKTVDYNAAIIKMLEGRIWQRDYRDRTFLQPDAIYNPELLPP
PSYPDNAVNAVTTRFVKTATNKMRCPVFCMAWTPEGRRLVTGTSSGEFTLWNGLTFNFET
ILQAHDSPVRTMVWSNNDSWMVTADHAGYIKYWQSNMNNIKMFPAHKEAIRGISFSPTDD
KFASCSDDGTIRIWDFYQCHEERILRGHGADVKCIDWHPQKGLIISGSKDNQQPIKLWDP
KTGQALATLHAHKNTVMDIKWNKNGNWLITASRDHLLKLFDLRNLSTEVQTFRGHKKESS
CVSWHPYHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVWTLAWHPLGHILCSGSN
DHTSKFWTRNRPGDQMKDKYNLNTLPQALAGLEDNEIDDVSAIPGMGPEDKVAASPPPAP
LNPDTIPGLDVDPAEELKLKAPIKKVPYSKPIPKQFQAQWNVVRGIEDNAEEGQDENAEI
NPEETPGCLPISEIKPDAIVIYGRLLPVKPGSALQQAIREGKDAIMQLAHSGAIPQLIDV
LPIDEETNFDLFAVDDEDEDYYDDNEDWRNWKDDWNEEEPMDEDYRMHNEDYPDEEMHMQ
GPYPPMQGPPMQGPFPPRPPMFDGNGPGPHGPGGPGPHGPGGPGHHGPGGPGPHGPGGPG
PHGQGGPGPHGQGGPGPHGPGGPGPHGPGGPGPHGQGGPGPHGPGGPGPHGPGGPGPHGP
GGPGPHGPGGPGLHGPGGPGPRPGFGPPRMMGPRPMGPPGQQFQDMSHGQPRFPPPHFNQ
GDGEGEYMDGHGPGGPGPHGPGGPGPRGPGGPGPQGQGGPGGPGPRGPGGPGPHGQGGPG
PHGPGGPGPRGQGGPGPRGPGFGPPRMMGSRPMGPSGPPFQDRSHGQPRFPPPHFNQGDG
EEEYTENNEEEYDENYDNNYDPNQFNDGYHGNDDRSNFRPNGEGWDENYWDENQEEMEDD
SYNNYDEGMNRGMPRGRSRGRPPFRGRGRGRGRGRGRGRGGKPDWFDDSNSNYDNNVNNS
SNFSRGGGHSRDDDESRFKGHKRFEESEERPRGRGRGRGGPKRARTRGRGW
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgattacgataacaccgcagcagttttcgcagccaccaccgttcgttcctaatgtaagc
gttccgcctccaaacttccatgccaaccagccaccaccacagcggtttcattcaggacat
gcaggtcagatccggcacaacaattacttcccacagttccgtcctcagttccggccaaac
aatgccctgttcgatcctgactttgatggcaagcgtctccgaaagtcgaccatgcgaaaa
acagtcgattacaatgcggccataataaaaatgcttgagggacgaatatggcaacgtgat
tatcgggatagaacattcctccaaccggatgcaatctataatcctgagcttttaccccca
ccaagttaccctgataacgctgtgaatgcagtaacaacccggtttgttaaaacagccacc
aacaaaatgcgctgtccagtgttctgtatggcatggaccccagagggtcggagattggtg
actggaacttccagtggtgaatttaccctttggaatggcttaacgtttaattttgaaact
atattgcaggcacatgatagtccagttcgaacaatggtttggtcaaataatgactcttgg
atggtcactgccgatcatgctggatatatcaaatattggcagtcaaatatgaataacatc
aaaatgtttcctgcacacaaagaggccattcgtggtatcagttttagtccaacggatgac
aaatttgcatcttgttctgatgatggtacaatacgaatatgggatttctatcagtgtcat
gaggaaagaatactcagaggtcatggtgcagatgtgaaatgtatagattggcatcctcaa
aaaggtttaatcatctcaggtagtaaagataatcaacagccaatcaaactgtgggacccc
aaaactgggcaagcattagcgactttacatgcacataaaaatactgtcatggacatcaaa
tggaataaaaatggcaattggctaatcactgcctctcgcgatcatctgctgaaactattt
gatctcagaaacctatctacggaggtacaaacattccgtggtcacaagaaggaatctagc
tgcgtttcatggcatccctaccatgaagggttattttgtagtggtggttctgatggggcc
attttattttggcatgttggagctgacaaagaagtaggtgctatagaacaagcacatgac
agtatagtttggaccttagcctggcatcctctaggtcacattctctgctccggttccaac
gatcacacaagtaaattttggacaaggaatcgaccaggggaccaaatgaaggataaatat
aacctcaacactctacctcaagctctagctggattagaagataatgaaatagatgatgtg
tcagctattccgggtatgggacctgaagataaagtggctgcatctccaccgccagctccg
cttaaccctgatacaattcctggattggatgtggatccagcagaggaattgaagctcaag
gctccaattaaaaaagttccttattctaagccaattccaaaacaattccaagcacagtgg
aacgttgtgcgcggtattgaagataatgcagaggaagggcaagatgaaaatgctgaaatt
aacccggaggaaacacctggatgtctacccatttctgaaatcaagccagatgctattgtg
atttatggaagactgctccctgttaaacctggatcggcgttacaacaagccattcgagaa
ggaaaggatgcaattatgcaacttgctcattctggtgctatccctcaattaatagatgtt
ctcccaatagatgaggaaacaaactttgatctttttgctgttgatgatgaagatgaggat
tattatgatgacaatgaagactggaggaattggaaggatgattggaatgaagaagaacca
atggatgaagactatagaatgcacaatgaagattacccagatgaagaaatgcatatgcaa
ggtccttatcctcccatgcaaggccctccaatgcaaggacctttccctccaagacctcct
atgtttgatggaaatgggcctggccctcacggcccaggtggtcctggtccccatggtcca
ggtggtcccggccatcacggtcctggtggtcctggtcctcacggtccaggtggtcccggt
ccccacggtcaaggtggtcctggtccccacggtcaaggtggtcccggtccccacggccca
ggtggtcctggtccccacggcccaggtggtcccggtccccacggtcaaggtggtcccggt
cctcatggtccaggaggtcccggtcctcatggtccaggagggcctggacctcatggtcca
ggtggtcctggccctcatggtcctggtggtcccggtctacatggtccaggtggtcctggc
ccccgtcctggttttgggccgcctcgaatgatgggcccacggccaatggggcctcctggc
cagcagttccaggatatgtcacatggtcaaccaagattcccccctcctcacttcaatcaa
ggagatggggaaggagaatatatggatggccatgggccaggtgggcctggtcctcatggt
ccaggtggtccagggcctcgtggtccaggtggtcccggtcctcaaggtcaaggtggtcca
ggtggtccagggcctcgtggtccaggtggtcctggtcctcatggtcaaggtggccctggt
cctcatggtccaggtggtcctggtcctcgtggtcaaggtggtcctggtcctcgtggtcca
ggttttgggccgcctcggatgatgggctcacgaccaatgggaccctctggtcctccgttc
caggatagatcacatggtcagccaagatttcctccacctcactttaatcaaggagatggg
gaagaagaatacacggaaaacaatgaagaggaatacgatgaaaattacgacaataattat
gatccaaaccaatttaatgatggttaccatggcaatgatgaccggtccaactttagaccc
aatggtgaaggttgggatgaaaactattgggatgaaaaccaagaagaaatggaagacgac
agctataacaactatgatgaaggcatgaatcgagggatgcctcgaggccgaagcagaggg
cggcctccgttcaggggtcgtgggcgtggtcggggtcgaggcaggggtagaggtaggggt
ggcaagcctgattggtttgatgacagtaatagcaattacgataataatgtaaataacagt
agtaactttagtaggggtggtggtcattcacgagatgatgatgaatcaagattcaaaggc
cacaagaggtttgaagagtccgaagagaggccccgaggtcgcgggcgaggtaggggtgga
cccaaaagagccaggactcgaggtaggggttggtga
DBGET
integrated database retrieval system
