Bemisia tabaci (sweet potato whitefly): 109039845
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Entry
109039845 CDS
T06019
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
btab03016
]
109039845
Enzymes [BR:
btab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109039845
Transfer RNA biogenesis [BR:
btab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109039845
Prokaryotic type
tRNA splicing ligases
109039845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
109039845
NCBI-ProteinID:
XP_018911068
UniProt:
A0A9P0F7E0
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKLTPYSWRIKKGFQPNMNVEGIFYVNNHLEKLMFDELRNACRPGMV
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDANDPKSVVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAADKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIH
SKEGQDYLKSMSAAANFAWVNRSSMTFLSRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTE
EHMVDGKPRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYTEVLRKLDEQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKSIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagacagtacaacgaagagctgaaataccttgagaaacttactccgtactca
tggaggatcaaaaaaggatttcaacccaacatgaatgtggaaggaatattttacgttaac
aatcatctggaaaaactcatgtttgatgagttacgaaatgcttgtcgtccaggcatggtt
ggtggttttttacctggcatgaagcaaattgcaaatgttgcagcattacctggcatcgtt
ggtaaatcagtcggacttcctgatgtacattccggttatggatttgctattgggaacatg
gctgcatttgatgcgaatgatccaaaatctgtggtatcacctggcggagtcggttttgat
attaattgcggtgttcgactcttgagaacaaatctgtttgaaaaggatgtgctcccggtc
aaagaacaactagctcagagtatgtttgatcatattccagtcggtgtggggtccaaaggg
atcatcccaatgaatgcccgtgacttggaggaagctttggagatgggcatggattggtct
ttgcgagagggttacatctgggctgaagacaaagaacactgtgaagagtacggtagaatg
ctaaacgcagatccctccaaagtcagtatgcgagcaaagaagcgaggcctccctcagttg
ggtactttaggtgcaggcaatcactatgctgaaattcaagtggtggaagagatttacgat
aaatgggctgctgacaaaatgggcatcgaggaaaaaggccagatctgcgtcatgattcac
tctggtagccgcggttttggacatcaagtggccactgatgcgttggttcaaatggagaaa
gcgatgaaacgtgacaatattgaaacaaatgatcgtcaattagcatgtgctagaattcac
tcaaaagagggacaagactaccttaagtcaatgtctgctgcagcaaattttgcatgggtt
aacagaagctccatgacattcctcagcagacaggcttttgctaagcagtttaacacaact
ccagatgatttagatatgcatgttatttatgatgtctctcacaatattgccaaaaccgaa
gagcatatggtagatggtaaaccaaggacattattagttcatagaaagggctctacacga
gcttttccaccgcatcatcccctcatccctgtggactaccaactgaccggccagccagtt
ttaatcggaggaaccatgggaacctgctcgtatgtactcaccggtacagaacaaggaatg
caagaaaccttcggatcaacatgtcatggggctggtcgtgctttgtctcgtgccaaatca
agacggaatctagactacacagaagtattgaggaaacttgatgaacaaggaatatccatc
cgagttgcatcccctaaactagtcatggaggaggcacctgagtcatacaaaaatgtgact
gacgtcgtcgatacgtgccatgcggctggcatcagcaaaaagtcaatcaaactcagacca
atcgctgtcattaaaggttaa
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