Bemisia tabaci (sweet potato whitefly): 109043732
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Entry
109043732 CDS
T06019
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03013
Nucleocytoplasmic transport
btab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109043732
03015 mRNA surveillance pathway
109043732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109043732
Enzymes [BR:
btab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109043732
5.6.2.5 RNA 5'-3' helicase
109043732
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109043732
mRNA cycle factors
Common to processing body (P body) and stress granule
109043732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
ATPase
AAA_16
nSTAND3
AAA_22
nSTAND_NTPase5
SRP54
Motif
Other DBs
NCBI-GeneID:
109043732
NCBI-ProteinID:
XP_018916568
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEDADLIGADTQGSEFDFTDFTLPSQSQTQASQLDSAPNQKTQ
INGKISSETITSVNGVATKLRELQFEEEEDDAFYNKELPPYACKYCAIHDPSCVVMCNIC
KKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYACGVRNVFVLGFIPAK
ADSVVVLLCRQPCASQNSLKDMNWDQEQWKPLIADRCFLSWLVKIPTDQEQLRARQVSAT
QIAKLEELWKDNVDATLTDLEKPGIDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGVEVRWDVGLNKKIIAYLNLAKTDGDMRLMHGDELRLRYLGEQHKSWSGIGHV
IKIPDNFGEEVGIELKSSSGAPTECTSNFVVDFIWKSTSFDRMQLALRKFAVDENSVSPY
IYHRLLGHDVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVKQSGGAVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLA
LHNQIRNMDVNSELQKLQQLKDETGELSSADEKRYRMLKKAEEKELLDAADVVCCTCVGA
GDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLPKIEFPWP
VPDKPMLFYVTQGQEEIAGSGTSYLNRTEAVNVEKMTTRFLKCGVKPEQIGVITPYEGQR
AFLVQHMQYQGALHSKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLN
VALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESLIQFSKPKQLV
NTVNPGSHFMSTTVYDAREALIPGSVYDRSGNHPGQMFPRPTLDMFARTHDPIGYISPER
AQAAMTNVPVPVGLLMNMAHIPPRFYNQQQQAMQTRDSSRMNGNLSQGRMNPVAGNRARK
PRNKLQSNMVSQNSQDLPQPYSQGMSQGMSQPGFSLSQPGLSLSQPELSQDSYMVGEFQS
QMDGLLSQDSTYQGDRSAFFNPPHPHFSQQPY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtacggacctagttcgcaaaccctaacgtttttagaaaccgaagat
gccgacttgatcggagccgatactcagggctccgaattcgatttcacggactttactctt
ccttcccaaagccaaactcaagcctcacagcttgattcagctcccaaccagaaaactcag
atcaatggtaaaattagcagcgagactatcacatcagtcaacggtgtcgcaaccaagctc
cgagaactgcaatttgaagaagaggaggatgatgccttttacaacaaggagctccctcct
tatgcatgtaaatattgcgccattcatgacccaagctgtgtcgttatgtgcaacatttgc
aagaaatggttctgtaatggacgtgggaacacatcaggctctcacattatcaaccatctt
gtccgagcaaagcataaggaagtaactttgcacaaagatggacccctgggtgaaacaatc
ctagaatgctacgcttgcggagtgcgtaacgtttttgttcttggttttattcctgccaaa
gccgattctgtggtagtgctcctctgccggcagccatgtgcatctcagaattctttgaag
gacatgaactgggatcaagaacaatggaagcccctgattgcagaccgttgctttttgtca
tggttggtgaaaattccaacagaccaagagcagttaagggctcgtcaagtctcggcaaca
cagatcgccaagttggaagaactttggaaggataatgtcgatgcaacgctcactgatctg
gagaaaccaggaattgatgaagaaccacaacaagttttgctgaggtatgaagatggatac
cagtatcagaatatctttggccccctggtaaaactggaagctgattatgacaagcgttta
aaggagtcccaaactcaagaaggcgttgaagtgcgctgggatgttggtctgaacaaaaag
atcatcgcatacttgaatcttgctaaaactgatggagatatgcgtttgatgcatggtgat
gaattgagactgcgatatcttggcgaacaacataaatcttggtcaggtatcggtcatgtc
atcaaaatccctgacaatttcggagaggaggttggtattgaactaaagtcgtccagtggt
gctccgacagaatgcacgtctaattttgttgtcgatttcatatggaaatccacttccttt
gacaggatgcaattggcattgcggaaatttgcggttgatgagaattccgtgtcaccttac
atctatcaccgattactcggccatgatgtggatgaggtcttattcaggtgccatcttcca
aaacatttttctgctcccaacttgcctgacctcaatagatcacaagtgtatgcggtgaaa
cacgcattgcaaagacccctatcactgattcaaggacccccaggaacaggaaaaactgta
acatcagcaacgatagtctaccagctggtcaaacaaagtggtggagctgtcttggtctgc
gccccctccaatattgccgttgatcagctcacggaaaaaattcatcgcactggcctgaag
gtcgtgagagtgtgtgctaaatcgcgagaagctatcgactcacctgtatcgttcttggcc
ctacacaatcagattcgcaatatggatgttaactctgaattgcaaaaactccaacaactg
aaagatgaaactggagagctttcgtcagcggacgaaaaacgttaccgcatgctcaagaag
gctgaagagaaagagctattggacgcagcagatgttgtctgttgtacctgtgtcggtgct
ggtgaccctcgtctcgcacgtctcaagttccactcaattctcattgatgagtcgatgcaa
gccacagaacccgagtgcatggtgcctgtcgtcctcggggccaagcaactcatcttagtc
ggagatcactgccaactgggacctgtcgtcatgtgcaaaaaggcgtccagggctggactc
tcgcagtcactgtttgaacggcttgttgttttaggtattcgtccattccggctggaagta
cagtaccgtatgcatccagaactttctcgcttcccatccaacttcttctacgaaggttca
cttcaaaatggtgtttgtgctgatgagcgtaaacttccgaaaatcgagttcccttggcca
gtccccgacaaacccatgttgttctatgtcacacagggccaagaagaaatcgccgggtcc
ggaacatcatatttgaacagaacagaagctgtgaacgtggaaaaaatgacaactagattt
ttgaagtgtggagtgaagccagaacagataggtgtcatcacaccctacgaaggccagcgt
gcatttttggtacagcacatgcagtatcaaggggctctccactcgaagttgtatcaagaa
atcgaggttgcatccgtggatgcgttccaagggcgagagaaggatttgattatcatgtct
tgtgtacgttcaaacgaacatcaaggtatcggttttttgaacgatccaaggcgtttgaat
gtagctttaacgcgagctaagtatggaattataattgtcggcaatccaaaggttttgtca
aagcagcccttgtggaaccacttgctaaacttttacaaggaacagaaggtcctcgttgaa
ggtcctctgaacaatttgaaagagtccttgatccagttctcaaaaccaaagcaactggtc
aacacagtgaatcctggcagccacttcatgtcgaccactgtttacgatgctcgtgaagcg
ttgataccaggtagcgtctacgaccgcagcggaaatcacccaggacaaatgttcccccgg
ccaacccttgatatgtttgcccgcacgcatgatcccatcggatatatttccccggaaaga
gcacaagcagccatgaccaatgtccccgttccagtaggcttgctcatgaatatggcccat
attccaccacgattctataatcaacagcaacaggcaatgcaaacacgagactcatccagg
atgaatggtaacttgtctcaaggtcgaatgaatcctgtggctggaaaccgggcccgcaaa
ccgcgcaataagcttcagtcaaacatggtgagccagaattcccaggatcttcctcagcct
tattcacagggtatgtcgcaaggaatgtcgcagccaggcttcagtctatctcaaccagga
ttatccctgtcccaaccagaattatctcaggacagctacatggttggagagttccagtcc
cagatggatggtctcttatcacaagattcaacttatcagggtgatcgctcagctttcttc
aatccaccacatccacatttctcacagcaaccatactga
DBGET
integrated database retrieval system
