Budorcas taxicolor (takin): 128047465
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Entry
128047465 CDS
T08909
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
btax
Budorcas taxicolor (takin)
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
btax03016
]
128047465 (RTCB)
Enzymes [BR:
btax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128047465 (RTCB)
Transfer RNA biogenesis [BR:
btax03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128047465 (RTCB)
Prokaryotic type
tRNA splicing ligases
128047465 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128047465
NCBI-ProteinID:
XP_052495637
LinkDB
All DBs
Position
5:complement(114869655..114890756)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagttcttggaaaagatcaataagaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccatcggtcttcctgatgtccattcaggttatgggtttgctattggaaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccgatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagggctaaaaaaagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtcgccacagatgcacttgtggctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccgtcagttggcttgtgctcgaatcgcttcc
ccagagggtcaggactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcacgtgatctatgatgtttctcacaacattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatcccctcattgcggttgattaccaacttaccggacaaccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgtcatggagcgggccgtgccctgtcccgagcaaagtcaaga
cgtaatttagatttccaggatgtcctcgacaaattggcagacatgggaattgcgatccgt
gttgcctcacccaagctggtaatggaagaggcccctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgaggccaatt
gctgtaatcaaaggatag
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