Budorcas taxicolor (takin): 128050324
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Entry
128050324 CDS
T08909
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128050324 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btax03019
]
128050324 (XAB2)
03041 Spliceosome [BR:
btax03041
]
128050324 (XAB2)
Messenger RNA biogenesis [BR:
btax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128050324 (XAB2)
Spliceosome [BR:
btax03041
]
Complex B
Other components
Prp19-related factors
128050324 (XAB2)
Complex C
128050324 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
128050324
NCBI-ProteinID:
XP_052498501
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All DBs
Position
7:complement(16495001..16504313)
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AA seq
892 aa
AA seq
DB search
MIGKSSANGKLVWVEGAGLRPRRHHTATPVRTWRAWKMVVMARLSRPERPDLVFEEEDLP
YEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVK
HRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPIT
QHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATV
VNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLA
DYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEED
DVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQ
TVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGELE
LRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQST
KAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTK
FIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAV
EPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDR
ARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMAS
QMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPSRAQSKILFVRSDAS
REELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLQED
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgatcgggaagagttcagccaatgggaaattagtttgggtcgagggagcaggccttagg
cctagacgtcatcataccgcgactcctgtccgtacctggagagcctggaaaatggtggtg
atggcgcggctctcgaggcccgagcgaccggaccttgtcttcgaggaagaggacctcccc
tatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgctacatcgag
ttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcgctcaagctg
ctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggcgcaggtgaag
catcgctgcgtgaccgaccccgcctatgaagatgtcaacaactgccatgagagggccttt
gtgttcatgcacaagatgccccggctgtggctggattactgccagttcctaatggaccag
ggacgtgtcacgcacacgcgccgaactttcgaccgggcccttcgggcattgcccatcacc
cagcactctcgtatttggcccctgtacctacgcttcctgcgctcacaccccctgcctgag
actgccgtgaggggctaccggcgcttcctcaagctgagccccgaaagcgctgaggagtat
atcgagtacctcaagtcaagcgaccggctggatgaggcggcacagcgcctggccaccgtg
gtgaacgacgagcgcttcgtgtcgaaggccggcaagtctaactaccagctgtggcacgag
ctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaatgtggatgccatc
atccgagggggcctcacccgcttcactgaccagctgggcaagctctggtgctcactggcc
gactactacatccgtagcggtcacttcgagaaggctcgggacgtgtacgaggaggccatc
cggactgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcccaattcgaa
gagagtatgatcgcagcgaagatggagaccgcctcggagctggggagggaggaggaggac
gacgtagacctggagctacgcctggcccgcttcgaacagctcatcagccggcggcccctg
ctcctcaacagtgtcctgctgcgccagaacccgcaccacgtgcacgagtggcacaagcgt
gtggccctgcaccagggccgcccccgggagatcatcaatacgtacacggaggctgtgcag
acggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgcgttcgccaag
ttttacgaggacaatgggcagctggacgatgcccgagtcatcttggagaaagccaccaaa
gtgagtttcaagcaggtggatgacctggccagtgtgtggtgtgaatgtggcgagctggag
ctccggcatgagaactatgaccaggccttgcgacttctgcggaaggcgacagcgctgcct
gcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtgtacaagtct
ctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttccagtccacc
aaagcagtgtatgaccgcatcctggacctgcgcatcgccacgcctcagatcgtcattaac
tacgctatgttcctggaggagcacaagtactttgaggagagcttcaaggcatacgagcgc
ggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacctacctgacgaag
ttcattgcccgctatgggggccgcaagctggagcgggcacgcgacctctttgagcaggcg
ctggatggctgccctcccaaatatgccaagacgctgtacctgctctacgcgcagctggaa
gaagagtggggcctggcgcggcacgccatggcagtgtatgagcgcgccaccagggctgtg
gagcccgcgcagcagtatgacatgttcaacatctacatcaagcgggcggctgagatctac
ggggtcacccacacccgcagtatctatcagaaggccattgaggtgctgtctgatgagcat
gcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggagatcgaccgc
gcccgggccatatacagcttctgctcgcagatctgcgacccccggacaaccggggccttc
tggcaaacgtggaaggactttgaggtccggcatggcaatgaggacaccatccgggagatg
ttgcggatccgccgcagcgtgcaggccacgtacaacacacaggtcaacttcatggcctca
cagatgctcaaggtgtcgggcagcgccacgggcactgtgtccgacctggccccggggcag
agcggtatggatgacatgaaactgctggagcagcgtgccgagcagttggcggcagaggcg
gagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagtgacgcctcc
cgggaggagctggctgagctggcccagcaggccaacccagaggagattgagctgggcgag
gacgaggatgaggatgagatggacctggagcccaacgaggtgcgcctggagcagcagagc
gtgccggccgccgtgttcgggagcctgcaggaggattga
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