Budorcas taxicolor (takin): 128053056
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Entry
128053056 CDS
T08909
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax04120
Ubiquitin mediated proteolysis
btax04137
Mitophagy - animal
btax04141
Protein processing in endoplasmic reticulum
btax05012
Parkinson disease
btax05014
Amyotrophic lateral sclerosis
btax05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128053056 (PRKN)
04120 Ubiquitin mediated proteolysis
128053056 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128053056 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
128053056 (PRKN)
05014 Amyotrophic lateral sclerosis
128053056 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
128053056 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
btax04131
]
128053056 (PRKN)
04121 Ubiquitin system [BR:
btax04121
]
128053056 (PRKN)
03029 Mitochondrial biogenesis [BR:
btax03029
]
128053056 (PRKN)
Enzymes [BR:
btax01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
128053056 (PRKN)
Membrane trafficking [BR:
btax04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
128053056 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
128053056 (PRKN)
Xenophagy
Other xenophagy associated proteins
128053056 (PRKN)
Ubiquitin system [BR:
btax04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
128053056 (PRKN)
Mitochondrial biogenesis [BR:
btax03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
128053056 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
128053056
NCBI-ProteinID:
XP_052501446
LinkDB
All DBs
Position
9:complement(88174188..89375548)
Genome browser
AA seq
465 aa
AA seq
DB search
MIVFVRFNSNHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLCVIFAGKELRNGLTVQSCD
LDQQSIVHVVLRPRRKDPEGHTPRGDSPRPAWGRSDREPESLTRVDLSSSVLPADSVGLA
VILQDSEEGGASSARRPAGKPTYNSFYVYCKGPCQGVQPGKLRVRCSTCQQATLTLAQGP
SCWEDVLIPNQMSGECRSPNCPGTRAEFFFKCGAHPTSDKETSVALNLITTNSRDISCIT
CTDIRSPVLVFQCTHRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYSRYQQYGAEECVLQLGGVLCPSPGCGAGLLPEAGQRKVTCEPAHGLGC
GFVFCRDCKEPYHEGDCGTVIEASGAVTQAYRVDEKAAEQARWEEASKETIKKTTKPCPR
CHVPVEKNGGCMHMKCPQPQCQLQWCWNCGCEWNRACMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactctaaccacgggttcccagtggaggtcgattctgac
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ctgtgtgtgattttcgcagggaaggagcttcggaatggcttgacagtgcagagctgtgac
ctggatcagcagagcatcgttcacgtggtgctgagaccgcggagaaaagacccagaaggg
cacacacctcggggggacagcccgcggcccgcttgggggcgctctgacagggagcccgag
agcctgactcgcgtggacctcagcagctcggtgctccccgccgactcggtgggcctggct
gtgatactgcaggacagcgaggagggcggcgcctcgtccgcccgcaggccagcaggtaaa
ccgacctataacagcttttatgtctactgcaaaggcccgtgtcaaggagtgcagccagga
aagctcagggtgcggtgtagcacctgccaacaagcaacgctcacccttgcccagggtcct
tcttgctgggaagatgtcttaatcccaaaccaaatgagtggtgaatgccggtctccaaac
tgccctgggaccagagcggaatttttctttaaatgtggagcacacccgacctctgacaag
gaaacatcagtagctttgaacctgatcacaacaaacagtcgagacatcagctgcataacg
tgtacggacatcaggagccccgtcctggttttccagtgcacccaccgccacgtcatctgc
ttagactgcttccacctgtactgcgtgaccagactcaacgatcggcagtttgtccacgac
ccgcagcttggctactctctgccttgcgtggctggctgtcccaactccttgattaaagag
ctccatcacttcaggattcttggagaagagcagtacagtcggtaccagcagtacggggcg
gaagagtgcgtgctgcagctagggggcgtgctctgccccagcccgggctgcggggcgggg
ctgcttccagaagcgggccagcgaaaggtcacctgcgaaccggcccacggcctgggctgc
gggttcgtcttctgccgggactgtaaggagccgtaccacgaaggtgactgcggcaccgtg
attgaagcctcaggagcagtcactcaggcctacagagtcgatgaaaaggctgcagagcag
gcccggtgggaggaagcctccaaagaaacaatcaagaagaccaccaagccctgtccccgc
tgccacgtgcccgtggagaaaaacggaggatgcatgcatatgaagtgcccgcagccccag
tgccagctccagtggtgctggaactgcggctgcgagtggaaccgcgcctgcatgggggac
cactggttcgacgtgtag
DBGET
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