Budorcas taxicolor (takin): 128057788
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Entry
128057788 CDS
T08909
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03008
Ribosome biogenesis in eukaryotes
btax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128057788 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
128057788 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btax03019
]
128057788 (XRN1)
03009 Ribosome biogenesis [BR:
btax03009
]
128057788 (XRN1)
03016 Transfer RNA biogenesis [BR:
btax03016
]
128057788 (XRN1)
03036 Chromosome and associated proteins [BR:
btax03036
]
128057788 (XRN1)
Messenger RNA biogenesis [BR:
btax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128057788 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
128057788 (XRN1)
Ribosome biogenesis [BR:
btax03009
]
Eukaryotic type
Pre-60S particles
RNases
128057788 (XRN1)
Transfer RNA biogenesis [BR:
btax03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
128057788 (XRN1)
Chromosome and associated proteins [BR:
btax03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128057788 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
128057788
NCBI-ProteinID:
XP_052506252
LinkDB
All DBs
Position
1:190576585..190689035
Genome browser
AA seq
1739 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
ILPAEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENSICWAALDKNGEEVVTSKDNLEEEM
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWFDSNTEFTYPSPWPEKFPPIERCCARYKIISLDAWRIDISKNNITKVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSIENIASSVLGKSVFVNWP
HLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQCNWTKEVQGISEY
YLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD
SRFSSIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGNEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEIEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNHYSS
NSSVSSGHLGGLNHSAQSLFVPTQVPARDDDEFCNIWQSLQGSGKVQHFQPLLQEKGAVL
PQEISQVTQHHKTGFNDNSVKQRKHEPHRKFKEECKSPKTESRSQKMSNRQAFGGPAKCN
FKLLKRNGSSEVSENQKVVTGYPSAVDKPNPGIENFLASLNISKENEIQSSHHEEPPSEE
HLSPQSFAMKGTRMLKEILKIDSSDSMDHKNEMKQFGNEVTVSSSRRDEYGSSSQPKQNK
KLTSYMNKPHSASEYHNVQSVDSVCWPAGQIPPVSTPVTELSRICSLVGMPQPDFSFLRT
PQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFAIQQLGSLGVNFPLPPPIFPSYPPA
VPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSVPWGPPMPVPGKPFHHTSYA
GTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFENKEAQSYQVTLLHTSQSASSDVTKGI
PQETSSASLPSSQIPQPASSFQVAAASSGHSMPHQKSAPSASRRKSRKLAVNFGVSKPE
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcgatatccctgcctcagcgaagtg
gtgaaggagcatcagattcctgaatttgataacttatacctggatatgaatggaattata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
ttcactgatatttttcactacttggaggtgttgttccgcattattaagcccaggaaagta
ttcttcatggctgttgatggtgtggctccccgagcaaagatgaaccaacagcgtgggaga
cgttttaggtcagcaaaggaggctgaagacaaaattaaaaaggcaatagaaaaaggagaa
attcttcctgcagaggccagatttgattccaactgcattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtactttgtaaatatgaaaatttctacagacaaatcg
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggagtttatcagatccgagaaggcaaagccagatcatgatccaaacaccaggcac
tgtctttatggcttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaagttcgatttggtggcaaaaagactcaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagcattaaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcggattttgatcgagaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaaattctatatgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggacaatttagaagaagagatg
gaagatgatgacctatttgaaaccgagtttaggcaatataaaaggacatattacatgaca
aagatgggagttgacgtagtttctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggttt
tatccgtaccattatgcacctttcctgtctgatatccgcaacatcagtacactcaaaatc
cattttgaactgggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctgcatgctaccagcatttgatgaccagtgacgattcacca
attatagaatattatccacctgattttaaaactgacctgaatgggaaacaacaggaatgg
gaagctgtggtactaataccttttattgatgagaagcgattgttagaagccatggagaca
tgtaaccactccctcaaaaaagaagagcgaaaaagaaatcaacatagtgagtgcctaatg
tgctggtttgacagcaacacagagttcacctacccctctccatggccagagaagttccct
cccatagagcgatgctgtgcaaggtataaaataatatcattagatgcttggcgtatagat
ataagcaaaaacaacataaccaaggttgaccagaaggcattatatttctgtggatttcct
actttgaaacacatcaaacacaaattttttttaaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtgaatgctgagtcagatgaa
cttagtatagaaaatatagcttcatcagtgcttgggaagtctgtctttgttaattggcct
catcttgaagaagctagagttgttggtgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttatttgggaagaactgcaccaccatctaaagtggtc
catcttggagacaaagaacaatgtaattggacaaaagaagtacaaggaatttcagaatac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtatatggtcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggagaagtccgtctagagaaacagtgg
tcaaaacaagttcttccatttgtttatcaaaccattgtcaaagacatccgagcttttgac
tcccgtttctccagtataaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaacaccctactatggatgcactggggaggttcaggattcaggggatgtgatt
acagaaggcagaattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacaaaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatatactaagaaagttggaaacgaatggatgtattca
tctgcagcagaacaacttcttgcagagtacttggagagagctccagagctattcagttac
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaacggtgctgagaaagttcaagaaattattacttggctgaaaggacatcctgtcagt
actttgtctcggtcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaagaagaaattgaaaagtgcaagcaaagaaagaataataagaaagttcgagtgacagtg
aagccccatttgctatacagacctttggaacagcaacatggggttattcctgatagggat
gcagaatttcgtctctttgaccgtgttgtaaatgtgagagagaacttttccgttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggcggcttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactatagctca
aattcatcagtttcatctgggcatttgggaggcctgaaccattccgctcaatcgcttttt
gttcctactcaagtacctgctagagatgatgatgaattttgtaacatttggcagtcctta
cagggatctggaaaggttcaacactttcagccactgctacaagagaagggtgcagttcta
cctcaagaaataagtcaagtaactcaacatcataaaactggctttaatgacaacagcgtt
aagcagagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaaact
gagagtcggtcacaaaaaatgtcaaataggcaggcatttggaggccctgccaaatgtaat
tttaagctactgaagagaaatggaagttcagaagtctcagaaaatcaaaaggttgtgact
ggttatccaagtgctgttgataagcctaatcctggaattgagaacttcttagcatccttg
aatatctccaaagaaaatgaaatacagtcatctcatcatgaagagcctccaagtgaagaa
catttgtcaccacagtcatttgctatgaagggaactcggatgcttaaagaaattctaaaa
attgacagctctgacagtatggaccataagaatgaaatgaaacagtttggtaatgaagtc
actgtttcctctagtagaagagatgaatatggatcttcctcacaacctaaacaaaataag
aaattgacatcttatatgaacaagcctcacagtgctagtgagtaccataatgttcagtct
gtggacagtgtgtgctggcctgccggccagattcctcctgtgtccacaccagtaactgaa
ctttctcgaatttgttcccttgttggaatgccacaaccagatttctcctttctgagaaca
ccacagacaatgacagtttgccaggtaaaattatctaacggtttactggtacatgggcca
cagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgctatacaacaattg
ggctccttaggagtgaatttccctttgcctccaccaatatttccaagttatcctccagct
gtaccacctggaaccattcctccagtttttccccagcctactggctgggatcactatgga
agcaacttagcactgggggcagctaatatcatgccttcatcatctcatctctttggctca
gtgccatggggaccaccaatgccagttcctgggaagcccttccatcatacatcgtatgct
gggaccatgcccatggctgggggaatgccaggtggtgtgcacaatcagttcatacctctg
caggtaactaaaaaaagagttgcaaacaaaaagaactttgagaataaggaggcccagagt
tatcaagtcaccctgcttcacactagccagtcagcatcttctgatgtcaccaaaggaatt
ccacaggagacttcatcagcttccttaccatcttctcagatccctcaacctgcatcttct
tttcaagttgcagctgcctcctcaggccatagtatgcctcaccagaagtcggcaccaagc
gcttcaagaagaaaatcaagaaaactggctgtcaattttggcgtttctaaacctgaataa
DBGET
integrated database retrieval system
