Budorcas taxicolor (takin): 128063057
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Entry
128063057 CDS
T08909
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03030
DNA replication
btax03410
Base excision repair
btax03420
Nucleotide excision repair
btax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128063057 (LIG1)
03410 Base excision repair
128063057 (LIG1)
03420 Nucleotide excision repair
128063057 (LIG1)
03430 Mismatch repair
128063057 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btax03032
]
128063057 (LIG1)
03400 DNA repair and recombination proteins [BR:
btax03400
]
128063057 (LIG1)
Enzymes [BR:
btax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128063057 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
128063057 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128063057 (LIG1)
DNA replication proteins [BR:
btax03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128063057 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128063057 (LIG1)
DNA repair and recombination proteins [BR:
btax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128063057 (LIG1)
NER (nucleotide excision repair)
Other NER factors
128063057 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
128063057 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
128063057
NCBI-ProteinID:
XP_052511576
LinkDB
All DBs
Position
18:complement(56121772..56145140)
Genome browser
AA seq
915 aa
AA seq
DB search
MQRSIRSFFQPKKEGKVKKPEKETSNSIRETESPPKVALKERNRVVSDGDSPVKRPGRKA
TRVLGSEGEEEEEEAPTTPRSQEPASDSPHPSPPSPVTLPESSPSRSSPSPAVAPPSGIP
KRRTARKQLPKRTFEDVLKEQGEDEDPETKKKKEEGEAETPTESLPEPEGGDKEEVEGGD
QPTTPPEPQTSKSPTESVSEPRVTVKQEPQEDGQAQPPPKAPKTLSSFFSPRKPAVKKEA
KEEGPGALRKDETKGHLDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSA
RLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGR
QLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAASVFAKFRDIAQLAGSASTTKKM
DVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQECPPAVVDAG
KGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVPLKPML
AHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYD
EESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWEV
KCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQ
NQQGAEPDSEQEEFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcaggtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagacctccaacagcatcagagaaacggagtcccctccgaaggtggcactgaag
gagcggaatcgagtggtgtctgacggtgactctccagtgaagaggccggggaggaaggca
accagggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacccccaga
agccaggagcctgcttcagactctccacacccctcacctcccagtcctgtcacactgcct
gagagcagcccttcccgctccagcccctccccagcggttgcgcccccatcagggatcccg
aagcgtcgcacggcccggaagcagcttcccaaacggacatttgaagatgtcctgaaagag
cagggcgaggacgaggacccggagactaagaagaagaaggaggaaggagaagcagagaca
ccaacagaaagcctcccagagcctgaagggggcgacaaggaagaagtggaaggcggggac
cagcccacgacgccccctgagccccagacctccaagtccccgacagaaagcgtttcagag
cccagggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccgccccccaaa
gctccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaaaaagaagcg
aaagaagaaggacctggtgctctaagaaaggacgagaccaagggacacctggacccaccg
agctacaatcctgccaagaacaattaccaccccatcgaggatgcctgctggaaggcgggc
cagagggtcccttatctggctgtggcccgggcgttcgagaagatcgaggaggtctctgct
cggctccggatggtggagacgctgagcaacctgctgcgctccgtggtggccctgtcacct
gctgacctcctgcccgtcctctacctcagcctcaaccgcctggggccgccccagcagggc
ctggagctcggcatcggagagggcatcctcctcaaggcagtggcccaggccacgggtcgg
cagctggagtccgtccgggccgaggtggccgagaagggtgatgtggggctggtggccgag
agcagccgcagcacccagaggctcgtgctgcccccacccgcgctcaccgccgccagcgtc
ttcgccaagttccgggacatcgcgcagctggcgggcagcgcttccaccaccaagaagatg
gatgtcatcaaaggcctctttgtggcctgccgtcactcagaggcgcgtttcattgccaga
gccctgagtggacggctgcgcctcgggctggctgagcagtcggtgctggcggccctcgcc
caggccgtgagcctcacgccccctggtcaagaatgcccccccgccgtggtggacgccggg
aagggcaagacggcagaagccagaaagacgtggctggaggagcaaggcatgatcctgaag
cagaccttctgtgaggtacctgacctggaccggatcgtccctgtgctgctggaacacggc
ctcgagcggctcccggagcactgcaggctgagcccaggggttcccctgaaaccaatgttg
gcccaccccacccggggtgtcagcgaggtcctgaagcgctttgaggaggcagctttcacc
tgcgaatacaaatacgacgggcagagggcacagattcacgttctggaaggcggggaggtg
aagatcttcagcaggaatcaggaggacaatactggaaggtaccctgacatcatcagccgc
atccccaagattaaactgccatcagtcacatccttcatcctagacacagaagctgtagct
tgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaag
gaggtggacgcggcagagatccaggtgcaggtgtgtctgtatgccttcgatctgatctac
ctcaacggagagtccctggtacgtgagcccctctcccgacgccggcagctgctccgggag
aacttcgtagagacggagggcgagtttgtctttgccacctccctggacaccaaggacacg
gagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgaggggctgatggtg
aagaccctggacgtggacgccacctacgagatcgccaagaggtcacacaactggctcaag
ctgaagaaggactacctcgagggtgtgggcgacaccctggacctcgtagtgattggtgcc
tacctgggcaaggggaaacgggccggccggtacggaggcttcttgctggcctcgtacgat
gaggagagcgaggagttccaggccatctgcaagctcggaactggcttcagtgacgaggaa
ctggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgctcctatgtc
cgggctgatggcgcggtggcccccgaccactggctggaccccagcgacgtgtgggaggtg
aagtgcgcggacctctccctgtcccccatctaccctgcggcccggggcctggtggacagc
gagaaggggatctccctccgcttccctcggtttattcgtgtccgtgaggataagaagccg
gagcaggccactactagtgcccaggtggccggtctgtacaagaagcagagtcagattcag
aaccagcagggtgctgagccggactccgagcaggaagagttctactag
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