Bartonella taylorii: LAJ60_01175
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Entry
LAJ60_01175 CDS
T08323
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btay
Bartonella taylorii
Pathway
btay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAJ60_01175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btay03400
]
LAJ60_01175 (mfd)
Enzymes [BR:
btay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAJ60_01175 (mfd)
DNA repair and recombination proteins [BR:
btay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAJ60_01175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
DUF7102
AAA_16
zf-CCHC_4
Motif
Other DBs
NCBI-ProteinID:
USP03093
UniProt:
A0A9Q8YY31
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All DBs
Position
283319..286819
Genome browser
AA seq
1166 aa
AA seq
DB search
MPIFKKIVIPKNVSAHITFDGITDGFEAFALAKLSSEIAQDKPLIYVVRDGTKIIHLQQV
LNFIEPNLPVLQFPAWDCLPYDRVSPGITVMARRFSALAHIANLRKNPRAAIILTTANAI
IQKLPPHEMIENQMIHVRVGQRANMGYLIQFLESNGFERVTVVRDVGEFAVRGGILDIFS
PIDTEPLRLDFFGDTLETIRVFETATQRTTNKRTEFFLHSMSEVVLTPERVSRFKSNYIR
TFGVSQKNNMLYEALSQGRRFAGMEHWLPFFYEKLDTFFDHCGNLPIVFEHLIEEVLIER
YRLIEDYYDARKELETDKKNPASYHPIEPNLLYLTPERVLERAQQSGQRVDFTPFDVPQT
FGQTVVHANIKLGYDFVKERNAQEKNVFSSVVHHISSLRAAGKKVLLACWSEGSMNRLLQ
VFDEHGLKKIETVKSLQTVKATPRDHITAAVIMIEHGFETEDFVIIAEQDILGDRLIRSP
RRRKHNTNFISEISALNSGDIVVHIDHGIGQFVGLKTITTTGVLRDCLEIKYAEGDRLFL
PVENIELLSRYGSEGTDVTLDKLGGVAWQARKTRLKKHLLEMAGQLIRIAAERATRSAPA
LVPPIGPFDEFVACFPYEETEDQMDAIDAVLEDLASGRPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFISRFQGLPVKIGHASRLVKTKELAQVKKGIADG
TIDIVIGTHALLSNAVNFSRLGLLIIDEEQHFGVKHKERLKKLKSDIHVLTLSATPIPRT
LGLALSGVRELSLITTPPIDRMAVRTFISPFDSLVIRETLLREYYRGGQSFYVCPRISDL
TSVEEYLKTHVPELKFIVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLAALYQLRGRVGRSKQRAYALFTFPSGKVLTTAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAIAELKDGEQNEDRQWSPQIS
LGTTVMIPESFVPDLPLRMGLYRRLTELDNLEQIDEFAAELIDRFGSLPLEVQHLLKVFY
IKTLCRKAHVEKLDTGPKGVVIQFRNNYFVNSVALVQWVGKQGSMAKIRPDQSIVLIRDW
TTVDERLTGAATVMTQLVEMAEQHSA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcctatatttaaaaaaattgtcattcccaaaaacgtttctgctcatataacttttgat
ggaattactgatggatttgaagcctttgcacttgccaaattgagttcagaaattgcacaa
gataaaccacttatctatgttgtccgtgatggaacaaaaattattcatttacagcaagtt
ttaaattttattgagccaaatttgcctgtacttcaatttcctgcgtgggattgtttaccc
tatgacagagtatctcctgggattactgttatggcacgtcggttctcagctttggcacat
atagcaaatttacgtaagaatccacgtgctgcaattatattaacaacagcaaatgcaatt
attcaaaaactacctcctcatgaaatgattgaaaatcaaatgattcatgtacgtgttggt
cagcgtgcaaacatggggtatttaattcaatttttagaatccaatggttttgaacgcgtt
acggttgtacgtgatgttggtgaatttgctgtgagaggaggaattcttgatattttttct
cctattgatactgaacctttacggcttgatttttttggtgacactttggaaaccatccgc
gtatttgaaacagcaacacaaagaacaacaaataaaagaactgaattttttttacactcc
atgagtgaagttgttcttacacctgagcgtgtgagccgatttaaaagcaattatattcgt
acatttggtgtgtcacaaaaaaataacatgctttatgaagctctttctcaagggcgacgt
tttgccggtatggaacattggttaccatttttttacgaaaaacttgacactttttttgac
cattgcggtaatttacctattgtctttgaacatctcatagaagaagtgcttattgaacgc
tatcgccttattgaagattattatgatgcacgcaaagagcttgaaactgataaaaagaat
cctgcttcttaccatccaatagaacctaatcttctctatttaacaccagagcgtgtttta
gagcgcgcgcaacaatccggacagcgtgttgattttacaccttttgatgttccacaaact
tttggacaaactgttgttcacgcaaatattaaactaggatatgactttgtaaaggagcgg
aatgcgcaagaaaaaaatgttttttcaagtgtggttcatcatatttcttcattacgtgct
gctggcaagaaggttctcttagcttgttggagtgaaggatcaatgaatcgtttgttgcag
gttttcgatgagcatggattgaaaaaaatagaaactgtcaaatcattacaaactgtaaaa
gcaacaccccgagatcatataactgcggcggttataatgattgagcatggttttgagact
gaagattttgttattatagcagagcaggatatccttggcgatcggttaataagatcacca
cggcggcgtaaacacaatacaaattttatctctgaaatttctgctttaaattctggtgat
attgttgtgcatattgaccatggtatcggacaatttgttggtcttaaaaccatcacgacc
actggagttttacgagattgtcttgaaattaagtatgctgaaggtgatagacttttttta
cctgttgaaaatattgaacttctttcacgttacggatcagagggaacagatgtaacgtta
gataaattaggtggtgttgcttggcaagcacgtaaaacacgactaaaaaaacatttattg
gaaatggcaggacagctgatccgtatagctgcagagcgggctacgcggtctgcacctgct
ttggttccaccaattggaccatttgatgagttcgttgcatgctttccttatgaagagacg
gaagatcaaatggatgcaattgatgcggttttagaagatttggcttcaggaagaccaatg
gatcgcttaatatgtggtgatgttggttttggaaaaacagaagttgctattcgaagtgct
tttgttgcagcattaaatggatatcaggttgctgttgttgtgccgacaactttgctttca
cggcaacattacaaaacttttatttcacgctttcaaggattacctgttaagattggccat
gcttcaagacttgtgaagactaaagaacttgcacaagtgaaaaagggtattgcagatggt
acgattgatattgtcattggaacgcatgcattattaagtaatgcagttaatttttcacga
ttaggacttcttattattgatgaggagcagcattttggcgtaaaacacaaagagcggtta
aaaaagcttaaaagtgatattcatgttctcactctttcagcgactcccatacctcgaact
ttagggttagcattatcaggagtacgcgaactttcattgataacgaccccacccattgat
agaatggcggtacgtacttttatttcaccatttgattcactcgttatacgcgaaacattg
cttcgagaatattatcgtggtggacaaagcttttatgtttgtcctcgtatttctgatctt
acttctgtggaagaatacctcaaaacacatgtcccagaactcaaatttattgtagcgcat
gggcaaatgccagccggacaacttgatgatattatgaatgcattttatgacgggcaatat
gatgttcttctgtcaactaccattattgaatcaggtcttgatatcccaacagccaataca
ttaatcgtacatcgtgctgagatgtttggtcttgcagctctctaccaattgcgtggtagg
gtagggcgttcaaaacaacgtgcttacgcactctttacctttccttctggtaaagtttta
acaactgctgctgatcgtcgtcttaaagttttacaatctcttgataccttgggggctggt
tttcaattagcaagtcatgatatggatattcgcggttcaggtaatttcttgggtgaggag
caatctgggcatatcaaagaagttggatttgagctctatcaaaaaatgcttgaagaagcc
attgctgagttaaaagatggcgagcaaaatgaagataggcaatggtcacctcaaatttca
cttggtacaacagtgatgataccagaaagttttgtacctgatttaccgttacgtatgggg
ctttatcgtcgtttaacagaacttgataatttagaacaaattgatgaatttgcagcagaa
ttaattgatcgctttggttctttaccccttgaagttcaacatcttcttaaagtcttttac
ataaaaacattgtgtcgaaaagcgcatgtagaaaaattggatactggaccaaagggtgtt
gttatacagtttcgcaataattattttgtaaatagtgttgctctagttcagtgggttgga
aagcaaggttcgatggcaaaaattcgaccggatcaaagtatcgttcttattcgtgattgg
acaacggtggacgaaagacttactggagcagcgactgttatgacacaactcgtagaaatg
gcagaacaacattctgcttag
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