Bacillus thuringiensis BMB171: BMB171_C0048
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Entry
BMB171_C0048 CDS
T01239
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btb
Bacillus thuringiensis BMB171
Pathway
btb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMB171_C0048 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btb03400
]
BMB171_C0048 (mfd)
Enzymes [BR:
btb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMB171_C0048 (mfd)
DNA repair and recombination proteins [BR:
btb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BMB171_C0048 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADH04866
LinkDB
All DBs
Position
54738..58268
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSGI
QHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHPFEGFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatacaatcggttattaatgga
ttagaagatgggttaaaagaacaacttatatcagggatggcaacgtcttctcgttcgtta
ttaatggcggctttatataaaaaaacaaaaaaatcacaattaatcgtgacacataactta
taccaagcacaaaaagtacatgaagatttagtggcattacttggtgaaaaagatgtgtgg
ctatatccagtgaatgaactgatagcatcggaaattggggttgcaagtccagaattgaag
gcgcaacgtatagaagtgttaaatcgcttggctgcgggagagaatggaatcattgtagcg
ccagtggcaggattgcgtagatttttaccaataaaagaattgtggaagcaaaagcaagtt
gaaatcaatctagggcaagagattgatttagatgcgctcttgcatactttacatcatatt
ggctatgaacgtaagtcgatggtagaagctccaggggagttcagtttgcgtgggggaata
ttagatatttatcctttaactgaagaactaccatttcgtattgaattctttgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaaggtaaaaaagaaagc
gttaggtttggtccggcaacagagtttttattttcacaggaagaattaaaatcaggaatt
cagcatcttgaagaaggtttaactaagacgatgcaaaaactttctgatgataaactaaag
actacagtgcttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacagatgtttaaatacttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagacggtgttgtaattttagacgagatttcccgtattcaagaaacagcatcg
catcttgaaacagaagaggcggaatggtatatatcgcttcttggtgaaggaacaattatt
caagatttatctttctctcacccattcgaggggtttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttgcgtcatatcgcacacacacatccgcaaaatattgttaat
gtaacatgtaaaacaatgcaagatttccatggacagatgaatttgttaaaaacagaaatt
gatagatggaatgaagggcattttacgactgttgtacttggaacagatgatgaacgtgtg
aaaaaattacaacatattttaagtgattatgatattgaggcagatattgtagaaggtaca
gatatcttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaaacaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcacgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcacaaagattatttaaatattaaatatcaaggtaatgat
aagctatacgttccaattgaacaaattgatcaagtccaaaaatatgtaggatctgaaggt
aaggatccgaaagtttataaattaggcggtaatgattggaaaaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaaaggctatgcatatacgccagatacggcagaacaacaagagttcgaatcctctttc
ccatatcaagagacagaggatcagttacgttctattgacgagattaaaaaagatatggaa
cgcggacgcccgatggataggctcctttgtggtgacgtagggtatggaaagactgaagtg
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcaattttagtaccg
acaacgattcttgcgcagcaacactatgaaacaattcgagagcgttttcaagattatccg
atcaatataggcttattaagtagattccgtacgagaaaacaacaaaatgaaacaattaag
ggcttaaaggatggaacagtagatatcgtaatcggaacacatcgtattttatctaaagat
gttacgtataaagatttagggcttcttattattgatgaagaacaaagatttggtgtaaca
cataaagaaaaaattaaacaattgaaggcaaatgttgacgtattaacattaacggcaact
ccgattccgcggacgcttcatatgtctatgcttggtgtgcgcgacttatctgttattgag
acaccaccagaaaatcgtttcccagtccaaacgtatgtagtcgagtataatccagcgtta
atgcgagaggcaatagagcgagagcttgcaagaggtggtcaagtttacttcctatataac
cgtgtagaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgcccgc
gtaacgtacgcacatgggaaaatgaacgaaagcgaattagagtctgttatgctatcattt
ttagaaggacagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacgttaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcgtatgcatactttgcgtataaa
cgtgacaaagtgctgtcagaggttgcagagaagcgtctacaagcaattaaagagttcacg
gaacttggatctggtttcaaaattgcgatgagagatttatctattcgtggagcaggtaat
ttgttaggggcagaacagcatggatttattgattctgtcggatttgatctatattcgcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggggctgaaaatatagttaat
gttgaaattgacttagaggtagatgcatatttaccagatgcttatatttcagatagtaag
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagaa
ttgcaggaagaaatgatcgatagatttggcgattatccacaagaagttggttatttatta
caaattgcaaatattaaagtgttggcaatgaaagaacaaattgaattaattaagcagaat
aaatttgaagtaacattcctattttctgaacaagcaagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaaggatcacaa
ttgaaaattgttatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa
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