Bacillus thuringiensis BMB171: BMB171_C1458
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Entry
BMB171_C1458 CDS
T01239
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
btb
Bacillus thuringiensis BMB171
Pathway
btb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMB171_C1458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btb03019
]
BMB171_C1458
Messenger RNA biogenesis [BR:
btb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMB171_C1458
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Raco_middle
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
ADH06274
LinkDB
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Position
1579308..1580981
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AA seq
557 aa
AA seq
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MKALKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQ
ENKEKIRGLIVTHGHEDHIGGIPYFLKQLNVPIYATKLTLGLIEIKLKEHNLQNDTELIV
IHSESEIDCGSIKATFFKTNHSIPDCLGIVFHTPEGTVVHTGDFKFDLTPVNNQHPDIHK
MAKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQ
IVEACIKTNRKLALLGRSMVNVVEVALEKGYLHIPEGMLIEANEVNRLDPKQVAILCTGS
QGEPMAALARLASGNYRQVDILPEDTVIIAATPIPGNERNVSRIIDNLFALGAKVIYGSG
SSTGVHVSGHAYQEELKLMLTLMKPKYFIPIHGEFRMLHHHSLLAESIGIEKENIFIVRN
GDVVDISNEVAIQSRRIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKVDG
EIISGPDIISRGFVYVRDSEEFLRELNKLAVITINNLKKENVNSWGILKREVREALGKYI
YTNTKRKPMILPIIIEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggcattaaaaaataacttgtctattgttgctttaggtggagtaaatgaaatagga
aaaaatatgtatgctatccaatatgaaaatgatattgtcgtcattgattgtggatctaaa
tttccagatgaaagtttattagggattgatttaataattccagacgtcacatatttgcaa
gaaaataaagaaaaaattcgcggtttaatagtaacgcacgggcatgaggaccatattggc
ggaataccatattttttaaaacaactaaatgtaccaatctatgcaacaaagttaacgtta
ggtttaattgaaattaaattaaaggaacacaatcttcaaaatgatacggaattaatcgtt
attcattcagaatcagaaattgattgtggttctattaaggcaactttttttaaaacgaac
cacagtattccggattgtctcggtattgtttttcatacaccagaaggtactgtagtacat
acaggtgattttaaatttgatttaacaccagtaaataatcaacaccctgatattcataaa
atggctaaaataggaagtgaaggtgtactagctttattatctgaaagcacaaatgcagaa
cgtccaggttttactccatcagaaaggtcagtaggagaacggatagaggaaatatttatg
aaagcaaatagaaaagtaattatttctacgtttgcttctaatgtgaatcgtgttcagcaa
atagttgaagcatgtataaaaacaaatcgaaaactagctttgctagggagaagtatggta
aatgtagtagaggttgctctagagaaaggttatttacatattccagaaggtatgttgatt
gaagcaaatgaggtaaatcgtttagatccaaagcaggttgcaatactttgtacaggaagt
caaggagaaccaatggcagctttagcgcgtttagctagtggaaactatagacaagtggat
attttaccagaagatacggttattatagccgcaacccctatcccaggaaatgaacgtaac
gtttctcgaattatcgataatttatttgcattaggagcaaaggtgatttacggatcaggt
agttctactggagtgcatgtatccggtcatgcatatcaagaagagttgaagttaatgctt
acattaatgaagccaaaatattttattccaattcatggagagtttagaatgctacaccac
catagtttgttagcagaatcaattggtattgaaaaggaaaatatctttattgtacgtaat
ggagatgttgtagatataagtaatgaagtggcaattcaatctagaagaatacaggcagga
aatatatatgtagatggattaggaattggagatgttggaaatgcattattacgtgatcgt
aaacaactttcagaagatggaatgctcgttatagttattacttttaataaagtggatgga
gaaataatttcaggtccagatattatttctcgtggatttgtctatgtccgtgattcagaa
gaatttctaagagaattaaataaattagctgttattacgattaataatttaaagaaagag
aatgtgaatagctggggtattttgaaaagggaggtaagagaagcattagggaagtatata
tatacaaatacaaaacgaaagccgatgattcttcctataataatagaggtttaa
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